A B C D E F G H I J K L M N O P Q R S T U V W X Z

P

packAll() - Method in class org.jdesktop.swingx.JXTable

Resizes all columns to fit their content.

PACKALL_ACTION_COMMAND - Static variable in class org.jdesktop.swingx.JXTable

Identifier of pack table action, used in JXTable's ActionMap.

packColumn(int, int) - Method in class org.jdesktop.swingx.JXTable

Packs an indivudal column in the table.

packColumn(int, int, int) - Method in class org.jdesktop.swingx.JXTable

Packs an indivual column in the table to less than or equal to the maximum witdth.

packColumn(JXTable, TableColumnExt, int, int) - Method in class org.jdesktop.swingx.table.ColumnFactory

Configures the column's preferredWidth to fit the content.

packSelected() - Method in class org.jdesktop.swingx.JXTable

Resizes the lead column to fit its content.

PACKSELECTED_ACTION_COMMAND - Static variable in class org.jdesktop.swingx.JXTable

Identifier of pack selected column action, used in JXTable's ActionMap.

packTable(int) - Method in class org.jdesktop.swingx.JXTable

Packs all the columns to their optimal size.

paint(Graphics) - Method in class org.jdesktop.swingx.color.GradientTrackRenderer

paint(Graphics) - Method in class org.jdesktop.swingx.JXGlassBox

paint(Graphics) - Method in class org.jdesktop.swingx.JXPanel

Overriden paint method to take into account the alpha setting

paint(Graphics2D, T, int, int) - Method in class org.jdesktop.swingx.painter.AbstractPainter

paint(Graphics2D, T, int, int) - Method in interface org.jdesktop.swingx.painter.Painter

Renders to the given Graphics2D object.

paint(Graphics, JComponent) - Method in class org.jdesktop.swingx.plaf.basic.BasicHyperlinkUI

paint(Graphics, JComponent) - Method in class org.jdesktop.swingx.plaf.basic.BasicMonthViewUI

paint(Graphics, JComponent) - Method in class org.jdesktop.swingx.plaf.basic.BasicStatusBarUI

paint(Graphics, JComponent) - Method in class org.jdesktop.swingx.plaf.basic.BasicTitledPanelUI

Paints the specified component appropriate for the look and feel.

paint(Graphics2D, T, int, int) - Method in class org.jdesktop.swingx.plaf.PainterUIResource

Renders to the given Graphics2D object.

paint(Graphics) - Method in class org.jdesktop.swingx.tree.DefaultXTreeCellEditor.XEditorContainer

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.jdesktop.swingx.border.DropShadowBorder

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.jdesktop.swingx.border.IconBorder

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.jdesktop.swingx.border.MatteBorderExt

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.jdesktop.swingx.plaf.windows.WindowsTipOfTheDayUI.TipAreaBorder

paintBorder(Component, Graphics, int, int, int, int) - Method in class org.jdesktop.swingx.renderer.TreeCellContext.TreeFocusBorder

paintDirtyRegions() - Method in class org.jdesktop.swingx.ForwardingRepaintManager

painted - Variable in class org.jdesktop.swingx.JXLabel

Painter<T> - Interface in org.jdesktop.swingx.painter

A painting delegate.

PainterAware - Interface in org.jdesktop.swingx.renderer

Temporary hook to allow painters in rendering.

PainterGlasspane - Class in org.jdesktop.swingx.painter

This is a glasspane which will draw the specified painter on top of the specified target components.

PainterGlasspane() - Constructor for class org.jdesktop.swingx.painter.PainterGlasspane

Creates a new instance of ValidationOverlay

PainterHighlighter - Class in org.jdesktop.swingx.decorator

Highlighter implementation which uses a Painter to decorate the component.

PainterHighlighter() - Constructor for class org.jdesktop.swingx.decorator.PainterHighlighter

Instantiates a PainterHighlighter with null painter and default predicate.

PainterHighlighter(HighlightPredicate) - Constructor for class org.jdesktop.swingx.decorator.PainterHighlighter

Instantiates a PainterHighlighter with null painter which uses the given predicate.

PainterHighlighter(Painter) - Constructor for class org.jdesktop.swingx.decorator.PainterHighlighter

Instantiates a PainterHighlighter with the given Painter and default predicate.

PainterHighlighter(HighlightPredicate, Painter) - Constructor for class org.jdesktop.swingx.decorator.PainterHighlighter

Instantiates a PainterHighlighter with the given painter and predicate.

PainterIcon - Class in org.jdesktop.swingx.painter

PainterIcon(Dimension) - Constructor for class org.jdesktop.swingx.painter.PainterIcon

PainterUIResource<T extends javax.swing.JComponent> - Class in org.jdesktop.swingx.plaf

An implementation of Painter as a UIResource.

PainterUIResource(Painter<? super T>) - Constructor for class org.jdesktop.swingx.plaf.PainterUIResource

Creates a new instance of PainterUIResource with the specified delegate painter.

paintGradient(Graphics, JComponent, Color, Color) - Static method in class org.jdesktop.swingx.util.PaintUtils

Paints a top to bottom gradient fill over the component bounds from color1 to color2.

paintIcon(Component, Graphics, int, int) - Method in class org.jdesktop.swingx.icon.ColumnControlIcon

paintIcon(Component, Graphics, int, int) - Method in class org.jdesktop.swingx.icon.EmptyIcon

paintIcon(Component, Graphics, int, int) - Method in class org.jdesktop.swingx.icon.SortArrowIcon

paintIcon(Component, Graphics, int, int) - Method in class org.jdesktop.swingx.painter.PainterIcon

PaintUtils - Class in org.jdesktop.swingx.util

A collection of utilties for painting visual effects.

PanelTextEditor - Class in pt.uminho.anote2.aibench.curator.gui

PanelTextEditor(ANoteDocumentView) - Constructor for class pt.uminho.anote2.aibench.curator.gui.PanelTextEditor

parent(InterfaceTreeNode<T>) - Method in class pt.uminho.anote2.aibench.resources.datastructures.tree.TreeOntology

parent(InterfaceTreeNode<T>) - Method in interface pt.uminho.anote2.datastructures.utils.tree.InterfaceTree

parseModel(String) - Static method in class org.jdesktop.swingx.MultiSplitLayout

A convenience method that converts a string to a MultiSplitLayout model (a tree of Nodes) using a a simple syntax.

ParsingUtils - Class in pt.uminho.anote2.aibench.curator.utils

ParsingUtils() - Constructor for class pt.uminho.anote2.aibench.curator.utils.ParsingUtils

ParsingUtils - Class in pt.uminho.anote2.datastructures.textprocessing

ParsingUtils() - Constructor for class pt.uminho.anote2.datastructures.textprocessing.ParsingUtils

partitionCount - Static variable in class pt.uminho.anote2.carrot.linkage.datastructures.ClusterAlgorithmsPropertiesNames

PartOfSpeechLabels - Enum in pt.uminho.anote2.datastructures.nlptools

PasswordStore - Class in org.jdesktop.swingx.auth

PasswordStore specifies a mechanism to store passwords used to authenticate using the LoginService.

PasswordStore() - Constructor for class org.jdesktop.swingx.auth.PasswordStore

paste() - Method in class org.jdesktop.swingx.JXEditorPane

The paste method has been overloaded to strip off the tags This doesn't really work.

pathways - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalNames

PatternFilter - Class in org.jdesktop.swingx.decorator

Pluggable pattern filter.

PatternFilter() - Constructor for class org.jdesktop.swingx.decorator.PatternFilter

Instantiates a includeAll PatternFilter with matchFlag 0 on column 0.

PatternFilter(String, int, int) - Constructor for class org.jdesktop.swingx.decorator.PatternFilter

Instantiates a PatternFilter with a Pattern compiled from the given regex and matchFlags on the column in model coordinates.

PatternMatcher - Interface in org.jdesktop.swingx.decorator

Implemented by classes that work with Pattern objects.

PatternModel - Class in org.jdesktop.swingx.search

Presentation Model for Find/Filter Widgets.

PatternModel() - Constructor for class org.jdesktop.swingx.search.PatternModel

PatternModel.AnchoredSearchMode - Class in org.jdesktop.swingx.search

Support for anchored input.

PatternModel.AnchoredSearchMode() - Constructor for class org.jdesktop.swingx.search.PatternModel.AnchoredSearchMode

PatternModel.RegexCreator - Class in org.jdesktop.swingx.search

Responsible for converting a "raw text" into a valid regular expression in the context of a set of rules.

PatternModel.RegexCreator() - Constructor for class org.jdesktop.swingx.search.PatternModel.RegexCreator

PatternPredicate - Class in org.jdesktop.swingx.decorator

Pattern based HighlightPredicate.

PatternPredicate(Pattern, int) - Constructor for class org.jdesktop.swingx.decorator.PatternPredicate

Instantiates a Predicate with the given Pattern and testColumn index (in model coordinates) highlighting all columns.

PatternPredicate(Pattern, int, int) - Constructor for class org.jdesktop.swingx.decorator.PatternPredicate

Instantiates a Predicate with the given Pattern and test-/decorate column index in model coordinates.

PatternPredicate(String, int, int) - Constructor for class org.jdesktop.swingx.decorator.PatternPredicate

Instantiates a Predicate with the given regex and test-/decorate column index in model coordinates.

PatternPredicate(String, int) - Constructor for class org.jdesktop.swingx.decorator.PatternPredicate

Instantiates a Predicate with the given regex and test column index in model coordinates.

Pdf - Class in es.uvigo.ei.sing.BioSearch.datatypes

Pdf(String) - Constructor for class es.uvigo.ei.sing.BioSearch.datatypes.Pdf

PDF - Class in pt.uminho.anote2.aibench.corpus.structures

Class that represent a pdf File

PDF(File) - Constructor for class pt.uminho.anote2.aibench.corpus.structures.PDF

PDF - Class in pt.uminho.anote2.aibench.publicationmanager.dataStructures

Class that represent a pdf File

PDF(File) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.dataStructures.PDF

PDFDownloadHandler - Interface in es.uvigo.ei.pdfDownloader

PDFtoText - Class in pt.uminho.anote2.datastructures.documents

PDFtoText() - Constructor for class pt.uminho.anote2.datastructures.documents.PDFtoText

PDFViewGUI - Class in pt.uminho.anote2.aibench.corpus.gui

GUI for view Pdf Files

PDFViewGUI(PDF) - Constructor for class pt.uminho.anote2.aibench.corpus.gui.PDFViewGUI

construct a pdf viewer, passing in the full file name

PDFViewGUI() - Constructor for class pt.uminho.anote2.aibench.corpus.gui.PDFViewGUI

construct an empty pdf viewer and pop up the open window

PDFViewGUI - Class in pt.uminho.anote2.aibench.publicationmanager.gui

GUI for view Pdf Files

PDFViewGUI(PDF) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.PDFViewGUI

construct a pdf viewer, passing in the full file name

PDFViewGUI() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.PDFViewGUI

construct an empty pdf viewer and pop up the open window

peek() - Method in class pt.uminho.anote2.datastructures.utils.multithearding.JobQueue

picker - Variable in class org.jdesktop.swingx.color.GradientPreviewPanel

PieceToSearch - Class in pt.uminho.anote2.aibench.curator.documentstructuring

This class contains the information about a piece of text to find in the Document Structuring process

PieceToSearch(String) - Constructor for class pt.uminho.anote2.aibench.curator.documentstructuring.PieceToSearch

PieceToSearch(String, int, int, int) - Constructor for class pt.uminho.anote2.aibench.curator.documentstructuring.PieceToSearch

PieceToSearch - Class in pt.uminho.anote2.datastructures.textprocessing.documentStructure

This class contains the information about a piece of text to find in the Document Structuring process

PieceToSearch(String) - Constructor for class pt.uminho.anote2.datastructures.textprocessing.documentStructure.PieceToSearch

PieceToSearch(String, int, int, int) - Constructor for class pt.uminho.anote2.datastructures.textprocessing.documentStructure.PieceToSearch

PinstripePainter - Class in org.jdesktop.swingx.painter

A fun Painter that paints pinstripes.

PinstripePainter() - Constructor for class org.jdesktop.swingx.painter.PinstripePainter

Create a new PinstripePainter.

PinstripePainter(Paint) - Constructor for class org.jdesktop.swingx.painter.PinstripePainter

Create a new PinstripePainter using an angle of 45, 8 pixel spacing, and the given Paint.

PinstripePainter(Paint, double) - Constructor for class org.jdesktop.swingx.painter.PinstripePainter

Create a new PinstripePainter using the given angle, 8 pixel spacing, and the given Paint

PinstripePainter(double) - Constructor for class org.jdesktop.swingx.painter.PinstripePainter

Create a new PinstripePainter using the given angle, 8 pixel spacing, and the foreground color of the Component

PinstripePainter(Paint, double, double, double) - Constructor for class org.jdesktop.swingx.painter.PinstripePainter

Create a new PinstripePainter with the specified paint, angle, stripe width, and stripe spacing.

PipelineEvent - Class in org.jdesktop.swingx.decorator

Defines an event that encapsulates changes to a pipeline.

PipelineEvent(Object, int) - Constructor for class org.jdesktop.swingx.decorator.PipelineEvent

Constructs a PipelineEvent object.

PipelineListener - Interface in org.jdesktop.swingx.decorator

PipelineListener

pleasewait - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfo

pluginManagerFile - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

pmid - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalNames

Polarity - Class in pt.uminho.anote2.relation.datastructures

Polarity() - Constructor for class pt.uminho.anote2.relation.datastructures.Polarity

poll() - Method in class pt.uminho.anote2.datastructures.utils.multithearding.JobQueue

populatePanel() - Method in class pt.uminho.generic.wizard2.DynamicPanel

populateProperties(Properties) - Method in class pt.uminho.anote2.datastructures.utils.conf.propertiesmanager.AbstractPropertyNode

populateProperties(Properties) - Method in interface pt.uminho.anote2.datastructures.utils.conf.propertiesmanager.IPropertyNode

popupMassagesTime - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalGUIOptions

PortInputVerifier - Class in pt.uminho.anote2.aibench.utils.settings.proxy

PortInputVerifier() - Constructor for class pt.uminho.anote2.aibench.utils.settings.proxy.PortInputVerifier

PortResourceUpdateReport - Class in pt.uminho.anote2.datastructures.report.resources

PortResourceUpdateReport(IResource<IResourceElement>, String) - Constructor for class pt.uminho.anote2.datastructures.report.resources.PortResourceUpdateReport

posicionMinima(int, int) - Static method in class es.uvigo.ei.pdfDownloader.Comun

positionChanged(ThumbDataEvent) - Method in interface org.jdesktop.swingx.multislider.ThumbDataListener

PositionComparator<T> - Class in pt.uminho.anote2.datastructures.utils

PositionComparator() - Constructor for class pt.uminho.anote2.datastructures.utils.PositionComparator

positive - Static variable in class pt.uminho.anote2.datastructures.annotation.re.EventPolarity

POSTAGGER - Static variable in class pt.uminho.anote2.relation.settings.RERelationDefaultSettings

POSTAGGER - Static variable in class pt.uminho.anote2.workflow.settings.basic.WorkflowBasicsDefaulSettings

POSTAGGER - Static variable in class pt.uminho.anote2.workflow.settings.general.WorkflowGeneralDefaulSettings

POSTAGGER - Static variable in class pt.uminho.anote2.workflow.settings.query.WorkflowQueryDefaulSettings

PosTaggerEnem - Enum in pt.uminho.anote2.relation.datastructures

POSTaggerHelp - Class in pt.uminho.anote2.relation.datastructures

POSTaggerHelp() - Constructor for class pt.uminho.anote2.relation.datastructures.POSTaggerHelp

postaggingModelFile - Static variable in class pt.uminho.anote2.datastructures.nlptools.OpenNLP

postaggingModelPerceptionFile - Static variable in class pt.uminho.anote2.datastructures.nlptools.OpenNLP

posTaggingSentence(String, long) - Method in class pt.uminho.anote2.datastructures.nlptools.OpenNLP

postags - Static variable in class pt.uminho.anote2.workflow.defaultconfiguration.workflow.basic.WorkflowBabicDefaultParameters

POSTagsHelpGUI - Class in pt.uminho.anote2.aibench.ner.gui.help

POSTagsHelpGUI() - Constructor for class pt.uminho.anote2.aibench.ner.gui.help.POSTagsHelpGUI

POSToken - Class in pt.uminho.anote2.datastructures.documents

POSToken(long, long, String, String) - Constructor for class pt.uminho.anote2.datastructures.documents.POSToken

PRE_PROCESSING - Static variable in class pt.uminho.anote2.aibench.ner.settings.NERLexicalResourcesDefaultSettings

PRE_PROCESSING - Static variable in class pt.uminho.anote2.workflow.settings.basic.WorkflowBasicsDefaulSettings

PRE_PROCESSING - Static variable in class pt.uminho.anote2.workflow.settings.general.WorkflowGeneralDefaulSettings

PRE_PROCESSING - Static variable in class pt.uminho.anote2.workflow.settings.query.WorkflowQueryDefaulSettings

PREFERENCE_KEY - Static variable in class org.jdesktop.swingx.JXTipOfTheDay

Key used to store the status of the "Show tip on startup" checkbox"

preferredLayoutSize(Container) - Method in class org.jdesktop.swingx.HorizontalLayout

preferredLayoutSize(Container) - Method in class org.jdesktop.swingx.MultiSplitLayout

preferredLayoutSize(Container) - Method in class org.jdesktop.swingx.StackLayout

preferredLayoutSize(Container) - Method in class org.jdesktop.swingx.VerticalLayout

prepareEditor(TableCellEditor, int, int) - Method in class org.jdesktop.swingx.JXTable

Overridden to adjust the editor's component orientation.

prepareRenderer(TableCellRenderer, int, int) - Method in class org.jdesktop.swingx.JXTable

Returns the decorated Component used as a stamp to render the specified cell.

prepareRenderer(TableCellRenderer, int, int) - Method in class org.jdesktop.swingx.JXTreeTable

Returns the decorated Component used as a stamp to render the specified cell.

prepareRenderingComponent(JXMonthView, Calendar, CalendarState) - Method in interface org.jdesktop.swingx.plaf.basic.CalendarRenderingHandler

Configures and returns a component for rendering of the given monthView cell.

preprocessing(Properties) - Method in class pt.uminho.anote2.ner.ner.NER

preprocessing(Properties) - Method in class pt.uminho.anote2.ner.ner.NERPreProcessingPOSTagging

preprocessing(Properties) - Method in class pt.uminho.anote2.ner.ner.NERPreProcessingPOSTaggingAndStopWords

preprocessing(Properties) - Method in class pt.uminho.anote2.ner.ner.NERPreProcessingStopWords

previousDay(long) - Static method in class org.jdesktop.swingx.calendar.DateUtils

Returns the day before date.

previousSibling() - Method in class org.jdesktop.swingx.MultiSplitLayout.Node

Return the Node that comes before this one in the parent's list of children, or null.

previousTip() - Method in class org.jdesktop.swingx.JXTipOfTheDay

Shows the previous tip in the list.

previousWeek(long) - Static method in class org.jdesktop.swingx.calendar.DateUtils

Returns the week before date.

printModel(MultiSplitLayout.Node) - Static method in class org.jdesktop.swingx.MultiSplitLayout

Print the tree with enough detail for simple debugging.

proceedSearch(TimeLeftProgress) - Method in class pt.uminho.anote2.aibench.resources.views.DictionaryView

processCreateCorpus(Corpora, ICorpusCreateConfiguration, QueryInformationRetrieval, ITimeLeftProgressSteps) - Static method in class pt.uminho.anote2.workflow.processes.WorkflowCreateCorpus

processCreateCorpus(Corpora, ICorpusCreateConfiguration, List<IPublication>, ITimeLeftProgressSteps) - Static method in class pt.uminho.anote2.workflow.processes.WorkflowCreateCorpus

processDocumetAnnotations(List<IEntityAnnotation>, IDocument) - Method in class pt.uminho.anote2.relation.cooccurrence.core.ARECooccurrence

processDocumetAnnotations(List<IEntityAnnotation>, IDocument) - Method in class pt.uminho.anote2.relation.cooccurrence.core.models.RECooccurrenceSentenceContiguous

processDocumetAnnotations(List<IEntityAnnotation>, IDocument) - Method in class pt.uminho.anote2.relation.cooccurrence.core.models.RECooccurrenceSentencePortion

processEntitiesClassStats - Static variable in class pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats

processes - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTablesName

processIRCrawl(PubmedCrawlExtention, ICorpusCreateConfiguration, QueryInformationRetrieval, ITimeLeftProgressSteps) - Static method in class pt.uminho.anote2.workflow.processes.WorkflowCreateCorpus

processIRCrawl(PubmedCrawlExtention, ICorpusCreateConfiguration, List<IPublication>, ITimeLeftProgressSteps) - Static method in class pt.uminho.anote2.workflow.processes.WorkflowCreateCorpus

processJournalRetrievalBefore() - Method in interface pt.uminho.anote2.core.corpora.ICorpusCreateConfiguration

processJournalRetrievalBefore() - Method in class pt.uminho.anote2.datastructures.corpora.CorpusCreateConfiguration

processOntologyElements() - Method in class pt.uminho.anote2.aibench.resources.datatypes.OntologyAibench

processOntologyFile(File) - Method in class pt.uminho.anote2.aibench.resources.datastructures.ontologies.OBOOntologyExtensionv1p2

processOntologyFile(File) - Method in class pt.uminho.anote2.datastructures.resources.ontology.loaders.LoadOBOOntologies

processOntologyFile(File) - Method in interface pt.uminho.anote2.resource.ontologies.IOntologyLoader

processPubmedSearch(PubMedSearchExtension, IIRSearchConfiguration) - Static method in class pt.uminho.anote2.workflow.processes.WorkflowPubmedSearch

processRelationCardinalities - Static variable in class pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats

processRelationProperty - Static variable in class pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats

processRelationsLemmas - Static variable in class pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats

processRelationsTypes - Static variable in class pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats

ProcessRunThread - Class in pt.uminho.anote2.aibench.utils.gui

ProcessRunThread() - Constructor for class pt.uminho.anote2.aibench.utils.gui.ProcessRunThread

processSintaticSentence(long, long) - Method in class pt.uminho.anote2.relation.gate.Gate7PosTagger

processTextFile() - Method in interface pt.uminho.anote2.corpusloaders.ICorpusLoader

processTextFile() - Method in class pt.uminho.anote2.corpusloaders.loaders.AIMEDProteinCorpusLoader

processTextFile() - Method in class pt.uminho.anote2.corpusloaders.loaders.ANoteCorpusLoader

processTextFile() - Method in class pt.uminho.anote2.corpusloaders.loaders.GeniaEventCorpusLoader

processType - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTablesName

ProcessTypeEnum - Enum in pt.uminho.anote2.process

PropertiesEditorGUI - Class in pt.uminho.anote2.aibench.utils.conf.propertiesmanager

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

PropertiesEditorGUI() - Constructor for class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.PropertiesEditorGUI

PropertiesManager - Class in pt.uminho.anote2.datastructures.utils.conf.propertiesmanager

This class manages the properties of OptFlux.

PropertiesManagerException - Exception in pt.uminho.anote2.datastructures.utils.conf.propertiesmanager

PropertiesManagerException(String) - Constructor for exception pt.uminho.anote2.datastructures.utils.conf.propertiesmanager.PropertiesManagerException

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.JXLabel.MultiLineSupport

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.JXTree.CellEditorRemover

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.plaf.basic.BasicDatePickerUI.PopupRemover

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.rollover.RolloverController

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.search.SearchFactory.FindRemover

propertyChange(PropertyChangeEvent) - Method in class org.jdesktop.swingx.table.DefaultTableColumnModelExt

propeties - Variable in class pt.uminho.anote2.datastructures.process.ir.configuration.IRSearchConfiguration

protein - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalNames

Entities

provideShape(Graphics2D, Object, int, int) - Method in class org.jdesktop.swingx.painter.MattePainter

provideShape(Graphics2D, T, int, int) - Method in class org.jdesktop.swingx.painter.RectanglePainter

Proxy - Class in pt.uminho.anote2.datastructures.configuration

Proxy() - Constructor for class pt.uminho.anote2.datastructures.configuration.Proxy

Proxy(String, String) - Constructor for class pt.uminho.anote2.datastructures.configuration.Proxy

proxy - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

ProxyInformationPanel - Class in pt.uminho.anote2.aibench.utils.settings.proxy

ProxyInformationPanel() - Constructor for class pt.uminho.anote2.aibench.utils.settings.proxy.ProxyInformationPanel

ProxyUtils - Class in pt.uminho.anote2.aibench.utils.settings.proxy

ProxyUtils() - Constructor for class pt.uminho.anote2.aibench.utils.settings.proxy.ProxyUtils

pt.uminho.anote2.aibench.corpus.datatypes - package pt.uminho.anote2.aibench.corpus.datatypes

pt.uminho.anote2.aibench.corpus.gui - package pt.uminho.anote2.aibench.corpus.gui

pt.uminho.anote2.aibench.corpus.gui.help - package pt.uminho.anote2.aibench.corpus.gui.help

pt.uminho.anote2.aibench.corpus.gui.help.listnodes - package pt.uminho.anote2.aibench.corpus.gui.help.listnodes

pt.uminho.anote2.aibench.corpus.gui.help.listrenders - package pt.uminho.anote2.aibench.corpus.gui.help.listrenders

pt.uminho.anote2.aibench.corpus.gui.help.treenodes - package pt.uminho.anote2.aibench.corpus.gui.help.treenodes

pt.uminho.anote2.aibench.corpus.gui.help.treerenders - package pt.uminho.anote2.aibench.corpus.gui.help.treerenders

pt.uminho.anote2.aibench.corpus.io.xgmml - package pt.uminho.anote2.aibench.corpus.io.xgmml

pt.uminho.anote2.aibench.corpus.lifecycle - package pt.uminho.anote2.aibench.corpus.lifecycle

pt.uminho.anote2.aibench.corpus.management.aibench - package pt.uminho.anote2.aibench.corpus.management.aibench

pt.uminho.anote2.aibench.corpus.management.database - package pt.uminho.anote2.aibench.corpus.management.database

pt.uminho.anote2.aibench.corpus.operations - package pt.uminho.anote2.aibench.corpus.operations

pt.uminho.anote2.aibench.corpus.stats - package pt.uminho.anote2.aibench.corpus.stats

pt.uminho.anote2.aibench.corpus.structures - package pt.uminho.anote2.aibench.corpus.structures

pt.uminho.anote2.aibench.corpus.utils - package pt.uminho.anote2.aibench.corpus.utils

pt.uminho.anote2.aibench.corpus.view - package pt.uminho.anote2.aibench.corpus.view

pt.uminho.anote2.aibench.corpus.view.help - package pt.uminho.anote2.aibench.corpus.view.help

pt.uminho.anote2.aibench.curator.datastructures - package pt.uminho.anote2.aibench.curator.datastructures

pt.uminho.anote2.aibench.curator.datastructures.relations - package pt.uminho.anote2.aibench.curator.datastructures.relations

pt.uminho.anote2.aibench.curator.documentstructuring - package pt.uminho.anote2.aibench.curator.documentstructuring

pt.uminho.anote2.aibench.curator.exeption - package pt.uminho.anote2.aibench.curator.exeption

pt.uminho.anote2.aibench.curator.gui - package pt.uminho.anote2.aibench.curator.gui

pt.uminho.anote2.aibench.curator.lifecycle - package pt.uminho.anote2.aibench.curator.lifecycle

pt.uminho.anote2.aibench.curator.menu.externallinks - package pt.uminho.anote2.aibench.curator.menu.externallinks

pt.uminho.anote2.aibench.curator.operation - package pt.uminho.anote2.aibench.curator.operation

pt.uminho.anote2.aibench.curator.text - package pt.uminho.anote2.aibench.curator.text

pt.uminho.anote2.aibench.curator.utils - package pt.uminho.anote2.aibench.curator.utils

pt.uminho.anote2.aibench.curator.view - package pt.uminho.anote2.aibench.curator.view

pt.uminho.anote2.aibench.loadsave.gui - package pt.uminho.anote2.aibench.loadsave.gui

pt.uminho.anote2.aibench.loadsave.lifecycle - package pt.uminho.anote2.aibench.loadsave.lifecycle

pt.uminho.anote2.aibench.loadsave.operations - package pt.uminho.anote2.aibench.loadsave.operations

pt.uminho.anote2.aibench.ner.configuration - package pt.uminho.anote2.aibench.ner.configuration

pt.uminho.anote2.aibench.ner.datastructures - package pt.uminho.anote2.aibench.ner.datastructures

pt.uminho.anote2.aibench.ner.gui - package pt.uminho.anote2.aibench.ner.gui

pt.uminho.anote2.aibench.ner.gui.help - package pt.uminho.anote2.aibench.ner.gui.help

pt.uminho.anote2.aibench.ner.lifecycle - package pt.uminho.anote2.aibench.ner.lifecycle

pt.uminho.anote2.aibench.ner.operations - package pt.uminho.anote2.aibench.ner.operations

pt.uminho.anote2.aibench.ner.settings - package pt.uminho.anote2.aibench.ner.settings

pt.uminho.anote2.aibench.ner.settings.pane - package pt.uminho.anote2.aibench.ner.settings.pane

pt.uminho.anote2.aibench.publicationmanager.dataStructures - package pt.uminho.anote2.aibench.publicationmanager.dataStructures

pt.uminho.anote2.aibench.publicationmanager.datatypes - package pt.uminho.anote2.aibench.publicationmanager.datatypes

pt.uminho.anote2.aibench.publicationmanager.datatypes.listeners - package pt.uminho.anote2.aibench.publicationmanager.datatypes.listeners

pt.uminho.anote2.aibench.publicationmanager.exeptions - package pt.uminho.anote2.aibench.publicationmanager.exeptions

pt.uminho.anote2.aibench.publicationmanager.gui - package pt.uminho.anote2.aibench.publicationmanager.gui

pt.uminho.anote2.aibench.publicationmanager.gui.help - package pt.uminho.anote2.aibench.publicationmanager.gui.help

pt.uminho.anote2.aibench.publicationmanager.gui.panes - package pt.uminho.anote2.aibench.publicationmanager.gui.panes

pt.uminho.anote2.aibench.publicationmanager.lifecycle - package pt.uminho.anote2.aibench.publicationmanager.lifecycle

pt.uminho.anote2.aibench.publicationmanager.operations - package pt.uminho.anote2.aibench.publicationmanager.operations

pt.uminho.anote2.aibench.publicationmanager.views - package pt.uminho.anote2.aibench.publicationmanager.views

pt.uminho.anote2.aibench.publicationmanager.views.help - package pt.uminho.anote2.aibench.publicationmanager.views.help

pt.uminho.anote2.aibench.resources.datastructures - package pt.uminho.anote2.aibench.resources.datastructures

pt.uminho.anote2.aibench.resources.datastructures.biocyc - package pt.uminho.anote2.aibench.resources.datastructures.biocyc

pt.uminho.anote2.aibench.resources.datastructures.biowarehouse - package pt.uminho.anote2.aibench.resources.datastructures.biowarehouse

pt.uminho.anote2.aibench.resources.datastructures.brenda - package pt.uminho.anote2.aibench.resources.datastructures.brenda

pt.uminho.anote2.aibench.resources.datastructures.entrezgene - package pt.uminho.anote2.aibench.resources.datastructures.entrezgene

pt.uminho.anote2.aibench.resources.datastructures.kegg - package pt.uminho.anote2.aibench.resources.datastructures.kegg

pt.uminho.anote2.aibench.resources.datastructures.ontologies - package pt.uminho.anote2.aibench.resources.datastructures.ontologies

pt.uminho.anote2.aibench.resources.datastructures.tree - package pt.uminho.anote2.aibench.resources.datastructures.tree

pt.uminho.anote2.aibench.resources.datatypes - package pt.uminho.anote2.aibench.resources.datatypes

pt.uminho.anote2.aibench.resources.gui - package pt.uminho.anote2.aibench.resources.gui

pt.uminho.anote2.aibench.resources.gui.dictionaryview - package pt.uminho.anote2.aibench.resources.gui.dictionaryview

pt.uminho.anote2.aibench.resources.gui.lookuptable - package pt.uminho.anote2.aibench.resources.gui.lookuptable

pt.uminho.anote2.aibench.resources.lifecycle - package pt.uminho.anote2.aibench.resources.lifecycle

pt.uminho.anote2.aibench.resources.operations - package pt.uminho.anote2.aibench.resources.operations

pt.uminho.anote2.aibench.resources.operations.dics - package pt.uminho.anote2.aibench.resources.operations.dics

pt.uminho.anote2.aibench.resources.operations.lexicalwords - package pt.uminho.anote2.aibench.resources.operations.lexicalwords

pt.uminho.anote2.aibench.resources.operations.lookuptables - package pt.uminho.anote2.aibench.resources.operations.lookuptables

pt.uminho.anote2.aibench.resources.operations.lookuptables.refresh - package pt.uminho.anote2.aibench.resources.operations.lookuptables.refresh

pt.uminho.anote2.aibench.resources.operations.ontologies - package pt.uminho.anote2.aibench.resources.operations.ontologies

pt.uminho.anote2.aibench.resources.operations.rules - package pt.uminho.anote2.aibench.resources.operations.rules

pt.uminho.anote2.aibench.resources.views - package pt.uminho.anote2.aibench.resources.views

pt.uminho.anote2.aibench.utils.conf.propertiesmanager - package pt.uminho.anote2.aibench.utils.conf.propertiesmanager

pt.uminho.anote2.aibench.utils.exceptions - package pt.uminho.anote2.aibench.utils.exceptions

pt.uminho.anote2.aibench.utils.File - package pt.uminho.anote2.aibench.utils.File

pt.uminho.anote2.aibench.utils.firstrun - package pt.uminho.anote2.aibench.utils.firstrun

pt.uminho.anote2.aibench.utils.gui - package pt.uminho.anote2.aibench.utils.gui

pt.uminho.anote2.aibench.utils.lifecycle - package pt.uminho.anote2.aibench.utils.lifecycle

pt.uminho.anote2.aibench.utils.operations - package pt.uminho.anote2.aibench.utils.operations

pt.uminho.anote2.aibench.utils.settings.proxy - package pt.uminho.anote2.aibench.utils.settings.proxy

pt.uminho.anote2.aibench.utils.timeleft - package pt.uminho.anote2.aibench.utils.timeleft

pt.uminho.anote2.aibench.utils.wizard - package pt.uminho.anote2.aibench.utils.wizard

pt.uminho.anote2.carrot.linkage.datastructures - package pt.uminho.anote2.carrot.linkage.datastructures

pt.uminho.anote2.carrot.linkage.examples - package pt.uminho.anote2.carrot.linkage.examples

pt.uminho.anote2.carrot.linkage.gui - package pt.uminho.anote2.carrot.linkage.gui

pt.uminho.anote2.carrot.linkage.gui.help - package pt.uminho.anote2.carrot.linkage.gui.help

pt.uminho.anote2.carrot.linkage.lifecycle - package pt.uminho.anote2.carrot.linkage.lifecycle

pt.uminho.anote2.carrot.linkage.operations - package pt.uminho.anote2.carrot.linkage.operations

pt.uminho.anote2.carrot.linkage.report - package pt.uminho.anote2.carrot.linkage.report

pt.uminho.anote2.carrot.linkage.views - package pt.uminho.anote2.carrot.linkage.views

pt.uminho.anote2.core.annotation - package pt.uminho.anote2.core.annotation

pt.uminho.anote2.core.configuration - package pt.uminho.anote2.core.configuration

pt.uminho.anote2.core.corpora - package pt.uminho.anote2.core.corpora

pt.uminho.anote2.core.database - package pt.uminho.anote2.core.database

pt.uminho.anote2.core.document - package pt.uminho.anote2.core.document

pt.uminho.anote2.core.report - package pt.uminho.anote2.core.report

pt.uminho.anote2.core.report.corpora - package pt.uminho.anote2.core.report.corpora

pt.uminho.anote2.core.report.processes - package pt.uminho.anote2.core.report.processes

pt.uminho.anote2.core.report.processes.ie.io.exporter - package pt.uminho.anote2.core.report.processes.ie.io.exporter

pt.uminho.anote2.core.report.processes.ir - package pt.uminho.anote2.core.report.processes.ir

pt.uminho.anote2.core.report.resources - package pt.uminho.anote2.core.report.resources

pt.uminho.anote2.core.utils - package pt.uminho.anote2.core.utils

pt.uminho.anote2.corpusloaders - package pt.uminho.anote2.corpusloaders

pt.uminho.anote2.corpusloaders.gui - package pt.uminho.anote2.corpusloaders.gui

pt.uminho.anote2.corpusloaders.lifecycle - package pt.uminho.anote2.corpusloaders.lifecycle

pt.uminho.anote2.corpusloaders.loaders - package pt.uminho.anote2.corpusloaders.loaders

pt.uminho.anote2.corpusloaders.operations - package pt.uminho.anote2.corpusloaders.operations

pt.uminho.anote2.corpusloaders.utils - package pt.uminho.anote2.corpusloaders.utils

pt.uminho.anote2.datastructures.annotation - package pt.uminho.anote2.datastructures.annotation

pt.uminho.anote2.datastructures.annotation.ner - package pt.uminho.anote2.datastructures.annotation.ner

pt.uminho.anote2.datastructures.annotation.properties - package pt.uminho.anote2.datastructures.annotation.properties

pt.uminho.anote2.datastructures.annotation.re - package pt.uminho.anote2.datastructures.annotation.re

pt.uminho.anote2.datastructures.configuration - package pt.uminho.anote2.datastructures.configuration

pt.uminho.anote2.datastructures.corpora - package pt.uminho.anote2.datastructures.corpora

pt.uminho.anote2.datastructures.database - package pt.uminho.anote2.datastructures.database

pt.uminho.anote2.datastructures.database.queries - package pt.uminho.anote2.datastructures.database.queries

pt.uminho.anote2.datastructures.database.queries.clusters - package pt.uminho.anote2.datastructures.database.queries.clusters

pt.uminho.anote2.datastructures.database.queries.corpora - package pt.uminho.anote2.datastructures.database.queries.corpora

pt.uminho.anote2.datastructures.database.queries.documents - package pt.uminho.anote2.datastructures.database.queries.documents

pt.uminho.anote2.datastructures.database.queries.process - package pt.uminho.anote2.datastructures.database.queries.process

pt.uminho.anote2.datastructures.database.queries.process.ner.lexicalresources - package pt.uminho.anote2.datastructures.database.queries.process.ner.lexicalresources

pt.uminho.anote2.datastructures.database.queries.process.re.info - package pt.uminho.anote2.datastructures.database.queries.process.re.info

pt.uminho.anote2.datastructures.database.queries.process.Stats - package pt.uminho.anote2.datastructures.database.queries.process.Stats

pt.uminho.anote2.datastructures.database.queries.resources - package pt.uminho.anote2.datastructures.database.queries.resources

pt.uminho.anote2.datastructures.database.queries.resources.dics - package pt.uminho.anote2.datastructures.database.queries.resources.dics

pt.uminho.anote2.datastructures.database.queries.resources.rules - package pt.uminho.anote2.datastructures.database.queries.resources.rules

pt.uminho.anote2.datastructures.database.schema - package pt.uminho.anote2.datastructures.database.schema

pt.uminho.anote2.datastructures.documents - package pt.uminho.anote2.datastructures.documents

pt.uminho.anote2.datastructures.documents.query - package pt.uminho.anote2.datastructures.documents.query

pt.uminho.anote2.datastructures.exceptions - package pt.uminho.anote2.datastructures.exceptions

pt.uminho.anote2.datastructures.exceptions.process.reprocess - package pt.uminho.anote2.datastructures.exceptions.process.reprocess

pt.uminho.anote2.datastructures.exceptions.resources.ontologies - package pt.uminho.anote2.datastructures.exceptions.resources.ontologies

pt.uminho.anote2.datastructures.general - package pt.uminho.anote2.datastructures.general

pt.uminho.anote2.datastructures.nlptools - package pt.uminho.anote2.datastructures.nlptools

pt.uminho.anote2.datastructures.process - package pt.uminho.anote2.datastructures.process

pt.uminho.anote2.datastructures.process.io.export - package pt.uminho.anote2.datastructures.process.io.export

pt.uminho.anote2.datastructures.process.ir.configuration - package pt.uminho.anote2.datastructures.process.ir.configuration

pt.uminho.anote2.datastructures.process.ner - package pt.uminho.anote2.datastructures.process.ner

pt.uminho.anote2.datastructures.process.network - package pt.uminho.anote2.datastructures.process.network

pt.uminho.anote2.datastructures.process.re.export - package pt.uminho.anote2.datastructures.process.re.export

pt.uminho.anote2.datastructures.process.re.export.configuration - package pt.uminho.anote2.datastructures.process.re.export.configuration

pt.uminho.anote2.datastructures.process.re.export.network.export - package pt.uminho.anote2.datastructures.process.re.export.network.export

pt.uminho.anote2.datastructures.report - package pt.uminho.anote2.datastructures.report

pt.uminho.anote2.datastructures.report.corpora - package pt.uminho.anote2.datastructures.report.corpora

pt.uminho.anote2.datastructures.report.processes - package pt.uminho.anote2.datastructures.report.processes

pt.uminho.anote2.datastructures.report.processes.io.export - package pt.uminho.anote2.datastructures.report.processes.io.export

pt.uminho.anote2.datastructures.report.resources - package pt.uminho.anote2.datastructures.report.resources

pt.uminho.anote2.datastructures.resources - package pt.uminho.anote2.datastructures.resources

pt.uminho.anote2.datastructures.resources.Dictionary - package pt.uminho.anote2.datastructures.resources.Dictionary

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.Biowarehouse - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.Biowarehouse

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.brenda - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.brenda

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.ByoCyc - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.ByoCyc

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.csv - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.csv

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.entrezgene - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.entrezgene

pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg - package pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg

pt.uminho.anote2.datastructures.resources.lexiacalwords - package pt.uminho.anote2.datastructures.resources.lexiacalwords

pt.uminho.anote2.datastructures.resources.lookuptable - package pt.uminho.anote2.datastructures.resources.lookuptable

pt.uminho.anote2.datastructures.resources.ontology - package pt.uminho.anote2.datastructures.resources.ontology

pt.uminho.anote2.datastructures.resources.ontology.loaders - package pt.uminho.anote2.datastructures.resources.ontology.loaders

pt.uminho.anote2.datastructures.resources.rule - package pt.uminho.anote2.datastructures.resources.rule

pt.uminho.anote2.datastructures.test - package pt.uminho.anote2.datastructures.test

pt.uminho.anote2.datastructures.textprocessing - package pt.uminho.anote2.datastructures.textprocessing

pt.uminho.anote2.datastructures.textprocessing.documentStructure - package pt.uminho.anote2.datastructures.textprocessing.documentStructure

pt.uminho.anote2.datastructures.utils - package pt.uminho.anote2.datastructures.utils

pt.uminho.anote2.datastructures.utils.conf - package pt.uminho.anote2.datastructures.utils.conf

pt.uminho.anote2.datastructures.utils.conf.propertiesmanager - package pt.uminho.anote2.datastructures.utils.conf.propertiesmanager

pt.uminho.anote2.datastructures.utils.delimiter - package pt.uminho.anote2.datastructures.utils.delimiter

pt.uminho.anote2.datastructures.utils.generic - package pt.uminho.anote2.datastructures.utils.generic

pt.uminho.anote2.datastructures.utils.multithearding - package pt.uminho.anote2.datastructures.utils.multithearding

pt.uminho.anote2.datastructures.utils.tree - package pt.uminho.anote2.datastructures.utils.tree

pt.uminho.anote2.ner.ner - package pt.uminho.anote2.ner.ner

pt.uminho.anote2.ner.ner.multithreading - package pt.uminho.anote2.ner.ner.multithreading

pt.uminho.anote2.ner.ner.rules - package pt.uminho.anote2.ner.ner.rules

pt.uminho.anote2.nergate.abner - package pt.uminho.anote2.nergate.abner

pt.uminho.anote2.nergate.chemistrytagger - package pt.uminho.anote2.nergate.chemistrytagger

pt.uminho.anote2.nergate.gui - package pt.uminho.anote2.nergate.gui

pt.uminho.anote2.nergate.lifecycle - package pt.uminho.anote2.nergate.lifecycle

pt.uminho.anote2.nergate.operations - package pt.uminho.anote2.nergate.operations

pt.uminho.anote2.process.IE.io.export - package pt.uminho.anote2.process.IE.io.export

pt.uminho.anote2.process.IE.ner - package pt.uminho.anote2.process.IE.ner

pt.uminho.anote2.process.IE.ner.export - package pt.uminho.anote2.process.IE.ner.export

pt.uminho.anote2.process.IE.network - package pt.uminho.anote2.process.IE.network

pt.uminho.anote2.process.IE.re - package pt.uminho.anote2.process.IE.re

pt.uminho.anote2.process.IE.re.clue - package pt.uminho.anote2.process.IE.re.clue

pt.uminho.anote2.process.IE.re.export.configuration - package pt.uminho.anote2.process.IE.re.export.configuration

pt.uminho.anote2.process.IR - package pt.uminho.anote2.process.IR

pt.uminho.anote2.process.ir.pubmed - package pt.uminho.anote2.process.ir.pubmed

pt.uminho.anote2.relation.configuration - package pt.uminho.anote2.relation.configuration

pt.uminho.anote2.relation.cooccurrence.configuration - package pt.uminho.anote2.relation.cooccurrence.configuration

pt.uminho.anote2.relation.cooccurrence.core - package pt.uminho.anote2.relation.cooccurrence.core

pt.uminho.anote2.relation.cooccurrence.core.models - package pt.uminho.anote2.relation.cooccurrence.core.models

pt.uminho.anote2.relation.cooccurrence.gui - package pt.uminho.anote2.relation.cooccurrence.gui

pt.uminho.anote2.relation.cooccurrence.lifecycle - package pt.uminho.anote2.relation.cooccurrence.lifecycle

pt.uminho.anote2.relation.cooccurrence.operations - package pt.uminho.anote2.relation.cooccurrence.operations

pt.uminho.anote2.relation.core.gate - package pt.uminho.anote2.relation.core.gate

pt.uminho.anote2.relation.core.relationModels - package pt.uminho.anote2.relation.core.relationModels

pt.uminho.anote2.relation.datastructures - package pt.uminho.anote2.relation.datastructures

pt.uminho.anote2.relation.gate - package pt.uminho.anote2.relation.gate

pt.uminho.anote2.relation.gui - package pt.uminho.anote2.relation.gui

pt.uminho.anote2.relation.lifecycle - package pt.uminho.anote2.relation.lifecycle

pt.uminho.anote2.relation.operations - package pt.uminho.anote2.relation.operations

pt.uminho.anote2.relation.settings - package pt.uminho.anote2.relation.settings

pt.uminho.anote2.relation.settings.pane - package pt.uminho.anote2.relation.settings.pane

pt.uminho.anote2.resource - package pt.uminho.anote2.resource

pt.uminho.anote2.resource.dictionary - package pt.uminho.anote2.resource.dictionary

pt.uminho.anote2.resource.lexicalwords - package pt.uminho.anote2.resource.lexicalwords

pt.uminho.anote2.resource.lookuptables - package pt.uminho.anote2.resource.lookuptables

pt.uminho.anote2.resource.ontologies - package pt.uminho.anote2.resource.ontologies

pt.uminho.anote2.resource.rules - package pt.uminho.anote2.resource.rules

pt.uminho.anote2.workflow.datastructures - package pt.uminho.anote2.workflow.datastructures

pt.uminho.anote2.workflow.defaultconfiguration.workflow.basic - package pt.uminho.anote2.workflow.defaultconfiguration.workflow.basic

pt.uminho.anote2.workflow.gui - package pt.uminho.anote2.workflow.gui

pt.uminho.anote2.workflow.gui.help - package pt.uminho.anote2.workflow.gui.help

pt.uminho.anote2.workflow.gui.panes - package pt.uminho.anote2.workflow.gui.panes

pt.uminho.anote2.workflow.gui.wizard.panes - package pt.uminho.anote2.workflow.gui.wizard.panes

pt.uminho.anote2.workflow.lifecycle - package pt.uminho.anote2.workflow.lifecycle

pt.uminho.anote2.workflow.operations - package pt.uminho.anote2.workflow.operations

pt.uminho.anote2.workflow.processes - package pt.uminho.anote2.workflow.processes

pt.uminho.anote2.workflow.settings.basic - package pt.uminho.anote2.workflow.settings.basic

pt.uminho.anote2.workflow.settings.basic.pane - package pt.uminho.anote2.workflow.settings.basic.pane

pt.uminho.anote2.workflow.settings.general - package pt.uminho.anote2.workflow.settings.general

pt.uminho.anote2.workflow.settings.general.pane - package pt.uminho.anote2.workflow.settings.general.pane

pt.uminho.anote2.workflow.settings.query - package pt.uminho.anote2.workflow.settings.query

pt.uminho.anote2.workflow.settings.query.pane - package pt.uminho.anote2.workflow.settings.query.pane

pt.uminho.anote2.workflow.settings.utils - package pt.uminho.anote2.workflow.settings.utils

pt.uminho.anote2.workflow.text - package pt.uminho.anote2.workflow.text

pt.uminho.anote2.workflow.wizards.basic - package pt.uminho.anote2.workflow.wizards.basic

pt.uminho.anote2.workflow.wizards.general - package pt.uminho.anote2.workflow.wizards.general

pt.uminho.anote2.workflow.wizards.general.panes - package pt.uminho.anote2.workflow.wizards.general.panes

pt.uminho.anote2.workflow.wizards.query - package pt.uminho.anote2.workflow.wizards.query

pt.uminho.anote2.workflow.wizards.query.pane - package pt.uminho.anote2.workflow.wizards.query.pane

pt.uminho.gate - package pt.uminho.gate

pt.uminho.gate.process - package pt.uminho.gate.process

pt.uminho.generic.components - package pt.uminho.generic.components

pt.uminho.generic.components.gradientpanel - package pt.uminho.generic.components.gradientpanel

pt.uminho.generic.components.gradientpanel.topgradientpanel - package pt.uminho.generic.components.gradientpanel.topgradientpanel

pt.uminho.generic.components.jchooser - package pt.uminho.generic.components.jchooser

pt.uminho.generic.components.table - package pt.uminho.generic.components.table

pt.uminho.generic.components.table.tablelineremover - package pt.uminho.generic.components.table.tablelineremover

pt.uminho.generic.components.table.tableremover - package pt.uminho.generic.components.table.tableremover

pt.uminho.generic.components.table.tablesearcher - package pt.uminho.generic.components.table.tablesearcher

pt.uminho.generic.defaultdialog - package pt.uminho.generic.defaultdialog

pt.uminho.generic.font - package pt.uminho.generic.font

pt.uminho.generic.genericpanel.buttons - package pt.uminho.generic.genericpanel.buttons

pt.uminho.generic.genericpanel.corpus - package pt.uminho.generic.genericpanel.corpus

pt.uminho.generic.genericpanel.database - package pt.uminho.generic.genericpanel.database

pt.uminho.generic.genericpanel.delimiters - package pt.uminho.generic.genericpanel.delimiters

pt.uminho.generic.genericpanel.filechooser - package pt.uminho.generic.genericpanel.filechooser

pt.uminho.generic.genericpanel.fluxdata - package pt.uminho.generic.genericpanel.fluxdata

pt.uminho.generic.genericpanel.result - package pt.uminho.generic.genericpanel.result

pt.uminho.generic.genericpanel.result.methodinformation - package pt.uminho.generic.genericpanel.result.methodinformation

pt.uminho.generic.genericpanel.tablesearcher - package pt.uminho.generic.genericpanel.tablesearcher

pt.uminho.generic.genericpanel.tablesearcher.searchPanel - package pt.uminho.generic.genericpanel.tablesearcher.searchPanel

pt.uminho.generic.genericpanel.textexpander - package pt.uminho.generic.genericpanel.textexpander

pt.uminho.generic.genericpanel.view - package pt.uminho.generic.genericpanel.view

pt.uminho.generic.genericresult - package pt.uminho.generic.genericresult

pt.uminho.generic.genericresult.methodinformation - package pt.uminho.generic.genericresult.methodinformation

pt.uminho.generic.operation - package pt.uminho.generic.operation

pt.uminho.generic.wizard2 - package pt.uminho.generic.wizard2

Publication - Class in pt.uminho.anote2.datastructures.documents

Publication(int) - Constructor for class pt.uminho.anote2.datastructures.documents.Publication

Publication(int, IPublication) - Constructor for class pt.uminho.anote2.datastructures.documents.Publication

Publication(int, String, String, String, String, String, String, String, String, String, String, String, boolean) - Constructor for class pt.uminho.anote2.datastructures.documents.Publication

publicationINSelectingPublication(int) - Method in class pt.uminho.anote2.aibench.publicationmanager.datatypes.QueryInformationRetrievalExtension

PublicationManager - Class in pt.uminho.anote2.aibench.publicationmanager.datatypes

Aibench Datatype This class serves to manage publication groping by queries.

PublicationManager() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.datatypes.PublicationManager

publicationManagerName - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

publicationManagerQuery - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

PublicationManagerView - Class in pt.uminho.anote2.aibench.publicationmanager.views

Aibench View - For Publication Manager

PublicationManagerView(PublicationManager) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.views.PublicationManagerView

PublicationResumeGUI - Class in pt.uminho.anote2.aibench.corpus.gui

GUI for View a Publication details

PublicationResumeGUI(IPublication) - Constructor for class pt.uminho.anote2.aibench.corpus.gui.PublicationResumeGUI

PublicationResumeGUI - Class in pt.uminho.anote2.aibench.publicationmanager.gui

GUI for View a Publication details

PublicationResumeGUI(QueryInformationRetrievalExtension, IPublication) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.PublicationResumeGUI

publications - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTablesName

publicationsIdYype - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTablesName

PublicationTreeTableNode - Class in pt.uminho.anote2.carrot.linkage.gui.help

PublicationTreeTableNode(IPublication, int) - Constructor for class pt.uminho.anote2.carrot.linkage.gui.help.PublicationTreeTableNode

PubMed_id - Class in es.uvigo.ei.sing.BioSearch.datatypes

PubMed_id(String) - Constructor for class es.uvigo.ei.sing.BioSearch.datatypes.PubMed_id

PubMedCrawl - Class in pt.uminho.anote2.process.ir.pubmed

PubMedCrawl(boolean) - Constructor for class pt.uminho.anote2.process.ir.pubmed.PubMedCrawl

PubmedCrawlExtention - Class in pt.uminho.anote2.aibench.publicationmanager.dataStructures

PubmedCrawlExtention(boolean, ISimpleTimeLeft) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.dataStructures.PubmedCrawlExtention

PubMedDownloader - Class in es.uvigo.ei.pdfDownloader

PubMedDownloader() - Constructor for class es.uvigo.ei.pdfDownloader.PubMedDownloader

PubmedException - Exception in pt.uminho.anote2.aibench.publicationmanager.exeptions

Class that implements a Pubmed Search Exception

PubmedException() - Constructor for exception pt.uminho.anote2.aibench.publicationmanager.exeptions.PubmedException

PubmedException(String) - Constructor for exception pt.uminho.anote2.aibench.publicationmanager.exeptions.PubmedException

pubmedLink - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

PubMedSearch - Class in pt.uminho.anote2.process.ir.pubmed

PubMedSearch() - Constructor for class pt.uminho.anote2.process.ir.pubmed.PubMedSearch

PubmedSearchAdvancePanel - Class in pt.uminho.anote2.aibench.publicationmanager.gui.panes

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

PubmedSearchAdvancePanel() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.panes.PubmedSearchAdvancePanel

PubMedSearchExtension - Class in pt.uminho.anote2.aibench.publicationmanager.dataStructures

Aibench Extension of PubMedSearch.

PubMedSearchExtension(boolean, ISimpleTimeLeft) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.dataStructures.PubMedSearchExtension

PubMedSearchExtensionUpdate - Class in pt.uminho.anote2.aibench.publicationmanager.dataStructures

PubMedSearchExtensionUpdate(boolean, TimeLeftProgress) - Constructor for class pt.uminho.anote2.aibench.publicationmanager.dataStructures.PubMedSearchExtensionUpdate

PubmedSearchGUI - Class in pt.uminho.anote2.aibench.publicationmanager.gui

AibenchGUI for PubmedSearchOperation

PubmedSearchGUI() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.PubmedSearchGUI

PubmedSearchOperation - Class in pt.uminho.anote2.aibench.publicationmanager.operations

Aibench Operation -- Operation for IIRSearch

PubmedSearchOperation() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.operations.PubmedSearchOperation

PubmedSearchOptionsPane - Class in pt.uminho.anote2.aibench.publicationmanager.gui.help

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

PubmedSearchOptionsPane() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.help.PubmedSearchOptionsPane

PubmedSearchSimpleAndAdvanced - Class in pt.uminho.anote2.aibench.publicationmanager.gui.panes

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

PubmedSearchSimpleAndAdvanced() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.panes.PubmedSearchSimpleAndAdvanced

PubmedSearchSimplePane - Class in pt.uminho.anote2.aibench.publicationmanager.gui.panes

PubmedSearchSimplePane() - Constructor for class pt.uminho.anote2.aibench.publicationmanager.gui.panes.PubmedSearchSimplePane

PubMex - Class in es.uvigo.ei.sing.BioSearch.connection

PubMex() - Constructor for class es.uvigo.ei.sing.BioSearch.connection.PubMex

PubMexAnote - Class in pt.uminho.anote2.process.ir.pubmed

PubMexAnote() - Constructor for class pt.uminho.anote2.process.ir.pubmed.PubMexAnote

PubMexProgressHandler - Interface in es.uvigo.ei.sing.BioSearch.connection

put(K, V) - Method in class pt.uminho.anote2.datastructures.utils.OrderedMap

putClientProperty(Object, Object) - Method in class org.jdesktop.swingx.table.TableColumnExt

Sets the client property "key" to value.

putProperty(Object, Object) - Method in class org.jdesktop.swingx.autocomplete.AutoCompleteDocument

putSaveFileTags(File) - Static method in class pt.uminho.anote2.aibench.utils.File.FileHandling

putValue(String, Object) - Method in class org.jdesktop.swingx.UIAction