A B C D E F G H I J K L M N O P Q R S T U V W X Z

O

ObjectToStringConverter - Class in org.jdesktop.swingx.autocomplete

This class is used to provide string representations for objects when doing automatic completion.

ObjectToStringConverter() - Constructor for class org.jdesktop.swingx.autocomplete.ObjectToStringConverter

OBOOntologyExtensionv1p0 - Class in pt.uminho.anote2.aibench.resources.datastructures.ontologies

OBOOntologyExtensionv1p0(IOntology, String, TimeLeftProgress) - Constructor for class pt.uminho.anote2.aibench.resources.datastructures.ontologies.OBOOntologyExtensionv1p0

OBOOntologyExtensionv1p2 - Class in pt.uminho.anote2.aibench.resources.datastructures.ontologies

OBOOntologyExtensionv1p2(IOntology, String, TimeLeftProgress) - Constructor for class pt.uminho.anote2.aibench.resources.datastructures.ontologies.OBOOntologyExtensionv1p2

ODD - Static variable in interface org.jdesktop.swingx.decorator.HighlightPredicate

Odd rows.

offer(IParallelJob) - Method in class pt.uminho.anote2.datastructures.utils.multithearding.JobQueue

OK_BUTTON_ACTION_COMMAND - Static variable in class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.OkCancelMiniPanel

okButtonAction() - Method in class pt.uminho.anote2.carrot.linkage.gui.CreateQueryFromClusterLabels

okButtonPerformed(int, String) - Method in class pt.uminho.anote2.aibench.corpus.gui.ChooseClassColorGUI

OkCancelMiniPanel - Class in pt.uminho.anote2.aibench.utils.conf.propertiesmanager

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

OkCancelMiniPanel() - Constructor for class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.OkCancelMiniPanel

Omim_id - Class in es.uvigo.ei.sing.BioSearch.datatypes

Omim_id(String) - Constructor for class es.uvigo.ei.sing.BioSearch.datatypes.Omim_id

ONE_DAY - Static variable in class org.jdesktop.swingx.calendar.CalendarUtils

ONE_HOUR - Static variable in class org.jdesktop.swingx.calendar.CalendarUtils

ONE_MINUTE - Static variable in class org.jdesktop.swingx.calendar.CalendarUtils

onNext() - Method in class pt.uminho.generic.wizard2.WizardPanelDescriptor

OntologicalClass - Class in pt.uminho.anote2.datastructures.resources.ontology.loaders

OntologicalClass(String, String, List<String>, List<String>) - Constructor for class pt.uminho.anote2.datastructures.resources.ontology.loaders.OntologicalClass

Ontologies - Class in pt.uminho.anote2.aibench.resources.datatypes

Ontologies(Resources) - Constructor for class pt.uminho.anote2.aibench.resources.datatypes.Ontologies

OntologiesView - Class in pt.uminho.anote2.aibench.resources.views

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

OntologiesView(Ontologies) - Constructor for class pt.uminho.anote2.aibench.resources.views.OntologiesView

Ontology - Class in pt.uminho.anote2.datastructures.resources.ontology

Ontology(int, String, String) - Constructor for class pt.uminho.anote2.datastructures.resources.ontology.Ontology

Ontology(int, String, String, boolean) - Constructor for class pt.uminho.anote2.datastructures.resources.ontology.Ontology

OntologyAibench - Class in pt.uminho.anote2.aibench.resources.datatypes

OntologyAibench(int, String, String) - Constructor for class pt.uminho.anote2.aibench.resources.datatypes.OntologyAibench

ontologyLoaderProblem - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfoSmall

OntologyMissingRootExeption - Exception in pt.uminho.anote2.datastructures.exceptions.resources.ontologies

OntologyMissingRootExeption() - Constructor for exception pt.uminho.anote2.datastructures.exceptions.resources.ontologies.OntologyMissingRootExeption

OntologyOBO12LoaderGUI - Class in pt.uminho.anote2.aibench.resources.gui

OntologyOBO12LoaderGUI() - Constructor for class pt.uminho.anote2.aibench.resources.gui.OntologyOBO12LoaderGUI

OntologyOBOLoaderGUI - Class in pt.uminho.anote2.aibench.resources.gui

OntologyOBOLoaderGUI() - Constructor for class pt.uminho.anote2.aibench.resources.gui.OntologyOBOLoaderGUI

ontologyrootFault - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfoSmall

ontologyUpdate - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfoSmall

ontologyUpdateCancel - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfoSmall

ontologyUpdateStatistics - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfoSmall

OntologyView - Class in pt.uminho.anote2.aibench.resources.views

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

OntologyView(OntologyAibench) - Constructor for class pt.uminho.anote2.aibench.resources.views.OntologyView

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.curator.gui.ChangeCuratorExtenalLinksMenu

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.loadsave.gui.SaveGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.ner.gui.NERAnoteOperationWizard1

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.publicationmanager.gui.PubmedSearchGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.publicationmanager.gui.UpdateGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.CreateDictionaryWizard3

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.CreateRuleGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.EditRuleGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.ImportDictionaryTermsFromCSVFileGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.ImportLexicalWordTermsFromCSVFileGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.ImportLookupTermsFromCSVFileGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.resources.gui.LoadDicContentsGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.PropertiesEditorGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.firstrun.StartWizart1

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.firstrun.StartWizart3

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.gui.AboutGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.gui.DialogGenericViewInputGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.gui.SaveGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.aibench.utils.wizard.WizardStandard

onValidationError(Throwable) - Method in class pt.uminho.anote2.nergate.gui.AbnerGUI

onValidationError(Throwable) - Method in class pt.uminho.anote2.nergate.gui.ChemistryTaggerGUI

OPACITY_CHANGED_PROPERTY - Static variable in class org.jdesktop.swingx.graphics.ReflectionRenderer

Identifies a change to the opacity used to render the reflection.

OPACITY_CHANGED_PROPERTY - Static variable in class org.jdesktop.swingx.graphics.ShadowRenderer

Identifies a change to the opacity used to render the shadow.

OpenBrowser - Class in pt.uminho.anote2.aibench.curator.operation

OpenBrowser() - Constructor for class pt.uminho.anote2.aibench.curator.operation.OpenBrowser

OpenBrowserAction - Class in org.jdesktop.swingx.action

OpenBrowserAction() - Constructor for class org.jdesktop.swingx.action.OpenBrowserAction

Creates a new instance of OpenBrowserAction

OpenBrowserAction(String) - Constructor for class org.jdesktop.swingx.action.OpenBrowserAction

OpenBrowserAction(URL) - Constructor for class org.jdesktop.swingx.action.OpenBrowserAction

openConnection() - Method in interface pt.uminho.anote2.core.database.IDatabase

Method that open a database Connection

openConnection() - Method in class pt.uminho.anote2.datastructures.database.ADatabase

openConnection() - Method in class pt.uminho.anote2.datastructures.database.MySQLDatabase

openConnection() - Method in class pt.uminho.anote2.datastructures.database.SQLLiteDatabase

OpenNLP - Class in pt.uminho.anote2.datastructures.nlptools

OpenNLP() - Constructor for class pt.uminho.anote2.datastructures.nlptools.OpenNLP

openURL(String) - Method in class pt.uminho.anote2.aibench.curator.menu.externallinks.ExternalLinksMenu

OperationApplySameNERAnote - Class in pt.uminho.anote2.aibench.ner.operations

OperationApplySameNERAnote() - Constructor for class pt.uminho.anote2.aibench.ner.operations.OperationApplySameNERAnote

OperationChangeCuratorMenuLinkManager - Class in pt.uminho.anote2.aibench.curator.operation

OperationChangeCuratorMenuLinkManager() - Constructor for class pt.uminho.anote2.aibench.curator.operation.OperationChangeCuratorMenuLinkManager

OperationErrorGUI - Class in pt.uminho.generic.operation

OperationErrorGUI() - Constructor for class pt.uminho.generic.operation.OperationErrorGUI

Creates new form OperationErrorGUI

OperationErrorGUI(String) - Constructor for class pt.uminho.generic.operation.OperationErrorGUI

OperationManualCuration - Class in pt.uminho.anote2.aibench.curator.operation

OperationManualCuration() - Constructor for class pt.uminho.anote2.aibench.curator.operation.OperationManualCuration

OperationNERAbner - Class in pt.uminho.anote2.nergate.operations

OperationNERAbner() - Constructor for class pt.uminho.anote2.nergate.operations.OperationNERAbner

OperationNerAnote - Class in pt.uminho.anote2.aibench.ner.operations

OperationNerAnote() - Constructor for class pt.uminho.anote2.aibench.ner.operations.OperationNerAnote

OperationNERChemistryTagging - Class in pt.uminho.anote2.nergate.operations

OperationNERChemistryTagging() - Constructor for class pt.uminho.anote2.nergate.operations.OperationNERChemistryTagging

OperationOptionPane - Class in pt.uminho.generic.operation

OperationOptionPane() - Constructor for class pt.uminho.generic.operation.OperationOptionPane

OperationRECooccurrence - Class in pt.uminho.anote2.relation.cooccurrence.operations

OperationRECooccurrence() - Constructor for class pt.uminho.anote2.relation.cooccurrence.operations.OperationRECooccurrence

OperationRelationExtraction - Class in pt.uminho.anote2.relation.operations

OperationRelationExtraction() - Constructor for class pt.uminho.anote2.relation.operations.OperationRelationExtraction

OperationSuccessGUI - Class in pt.uminho.generic.operation

OperationSuccessGUI() - Constructor for class pt.uminho.generic.operation.OperationSuccessGUI

Creates new form OperationSuccessGUI

optimalPhraseLength - Static variable in class pt.uminho.anote2.carrot.linkage.datastructures.ClusterAlgorithmsPropertiesNames

OptionsPanel - Class in pt.uminho.anote2.aibench.utils.conf.propertiesmanager

This code was edited or generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

OptionsPanel(Set<String>) - Constructor for class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.OptionsPanel

OptionsPanel(Set<String>, boolean) - Constructor for class pt.uminho.anote2.aibench.utils.conf.propertiesmanager.OptionsPanel

OrderedMap<K,V> - Class in pt.uminho.anote2.datastructures.utils

OrderedMap(Comparator<K>) - Constructor for class pt.uminho.anote2.datastructures.utils.OrderedMap

orderPosTokens - Variable in class pt.uminho.anote2.datastructures.documents.Sentence

org.jdesktop.beans - package org.jdesktop.beans

Contains classes to extend the functionality defined in the java.beans package.

org.jdesktop.swingx - package org.jdesktop.swingx

Contains extensions to the Swing GUI toolkit, including new and enhanced components that provide functionality commonly required by rich, data-centric client applications.

org.jdesktop.swingx.action - package org.jdesktop.swingx.action

Contains classes related to the JDNC actions architecture.

org.jdesktop.swingx.auth - package org.jdesktop.swingx.auth

Contains classes and interfaces used by the JXLoginPane component.

org.jdesktop.swingx.autocomplete - package org.jdesktop.swingx.autocomplete

Contains classes to enable automatic completion for JComboBox and other components.

org.jdesktop.swingx.autocomplete.workarounds - package org.jdesktop.swingx.autocomplete.workarounds

Contains classes to workaround Look and Feel implemetation problems caused when applying the autocomplete decorators.

org.jdesktop.swingx.border - package org.jdesktop.swingx.border

Contains extensions to the javax.swingx.border package.

org.jdesktop.swingx.calendar - package org.jdesktop.swingx.calendar

Contains classes and interfaces used by the JXDatePicker and JXMonthView components.

org.jdesktop.swingx.color - package org.jdesktop.swingx.color

Contains classes and interfaces used by the JXGradientChooser component.

org.jdesktop.swingx.combobox - package org.jdesktop.swingx.combobox

Contains classes and interfaces used by the JComboBox component.

org.jdesktop.swingx.decorator - package org.jdesktop.swingx.decorator

Contains API used to implement coordinated sorting, filtering and highlighting of the extended Swing cell-rendering component classes JXTable, JXTreeTable, JXTree, and JXList.

org.jdesktop.swingx.error - package org.jdesktop.swingx.error

Contains classes and interfaces used by the JErrorPane component.

org.jdesktop.swingx.event - package org.jdesktop.swingx.event

Contains API for events added as part of JDNC's Swing extensions, such as message and progress events.

org.jdesktop.swingx.geom - package org.jdesktop.swingx.geom

Contains custom shapes for 2D rendering.

org.jdesktop.swingx.graphics - package org.jdesktop.swingx.graphics

Contains graphic utilities and effects for working with images.

org.jdesktop.swingx.hyperlink - package org.jdesktop.swingx.hyperlink

org.jdesktop.swingx.icon - package org.jdesktop.swingx.icon

Contains Swing Icon classes used by JDNC's Swing Extensions.

org.jdesktop.swingx.image - package org.jdesktop.swingx.image

Contains set of useful filters for image operations like Gausian or Fast or Star Blur or Color Tint filter.

org.jdesktop.swingx.multislider - package org.jdesktop.swingx.multislider

Contains classes used by slider classes, such as JXMultiThumbSlider.

org.jdesktop.swingx.multisplitpane - package org.jdesktop.swingx.multisplitpane

Contains support classes for the MultiSplitLayout layout manager.

org.jdesktop.swingx.painter - package org.jdesktop.swingx.painter

Contains classes and interfaces used by painter enabled components.

org.jdesktop.swingx.painter.effects - package org.jdesktop.swingx.painter.effects

Contains Predefined effects for painters.

org.jdesktop.swingx.plaf - package org.jdesktop.swingx.plaf

Provides pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.basic - package org.jdesktop.swingx.plaf.basic

Provides basic implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.linux - package org.jdesktop.swingx.plaf.linux

Provides linux specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.macosx - package org.jdesktop.swingx.plaf.macosx

Provides macos specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.metal - package org.jdesktop.swingx.plaf.metal

Provides metal laf specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.misc - package org.jdesktop.swingx.plaf.misc

A package to collect miscellaneous UI delegates.

org.jdesktop.swingx.plaf.motif - package org.jdesktop.swingx.plaf.motif

Provides motif laf specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.nimbus - package org.jdesktop.swingx.plaf.nimbus

Provides nimbus laf specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.plaf.windows - package org.jdesktop.swingx.plaf.windows

Provides window laf specific implementation of pluggable look-and-feel for SwingX components together with a mechanism to support custom component look-and-feels.

org.jdesktop.swingx.renderer - package org.jdesktop.swingx.renderer

Contains implementation of renderers used by JXTable, JXTreeTable and related classes.

org.jdesktop.swingx.rollover - package org.jdesktop.swingx.rollover

org.jdesktop.swingx.search - package org.jdesktop.swingx.search

org.jdesktop.swingx.table - package org.jdesktop.swingx.table

Contains API required by the extended JTable component, JXTable.

org.jdesktop.swingx.tips - package org.jdesktop.swingx.tips

Provides classes and interfaces for dealing with org.jdesktop.swingx.JXTipOfTheDay.

org.jdesktop.swingx.tree - package org.jdesktop.swingx.tree

Contains Tree specific classes and interfaces.

org.jdesktop.swingx.treetable - package org.jdesktop.swingx.treetable

Contains API required by the JXTreeTable component.

org.jdesktop.swingx.util - package org.jdesktop.swingx.util

Contains utility API required by JDNC's Swing Extensions.

organimsOption - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalNames

Dictionary Loaders Options

organism - Variable in class pt.uminho.anote2.datastructures.process.ir.configuration.IRSearchConfiguration

organism - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalNames

organismMatching(String, String) - Method in class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.brenda.Brenda

organismMatching(String, String) - Method in class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg.Kegg

organismMatching(String, String) - Method in class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.UniProt

OS - Class in org.jdesktop.swingx.util

Provides methods related to the runtime environment.

OS() - Constructor for class org.jdesktop.swingx.util.OS

OS_AIX - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is IBM AIX.

OS_FREEBSD - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is FreeBSD

OS_HP - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is HP-UX.

OS_IRIX - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is SGI IRIX.

OS_LINUX - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Linux.

OS_MAC - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Mac.

OS_OS2 - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is OS/2.

OS_OTHER - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is unknown.

OS_SOLARIS - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Solaris.

OS_SUNOS - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Sun OS.

OS_TRU64 - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Compaq TRU64 Unix

OS_UNIX_MASK - Static variable in class org.jdesktop.swingx.util.Utilities

A mask for Unix platforms.

OS_VMS - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Compaq OpenVMS

OS_WIN2000 - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Windows 2000.

OS_WIN95 - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Windows 95.

OS_WIN98 - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Windows 98.

OS_WIN_OTHER - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is one of the Windows variants but we don't know which one it is

OS_WINDOWS_MASK - Static variable in class org.jdesktop.swingx.util.Utilities

A mask for Windows platforms.

OS_WINNT - Static variable in class org.jdesktop.swingx.util.Utilities

Operating system is Windows NT.

otherConfigurationFile - Static variable in class pt.uminho.anote2.datastructures.utils.conf.GlobalOptions

OtherConfigurations - Class in pt.uminho.anote2.datastructures.utils.conf

OtherConfigurations() - Constructor for class pt.uminho.anote2.datastructures.utils.conf.OtherConfigurations

otherIDPublications - Static variable in class pt.uminho.anote2.datastructures.database.queries.documents.QueriesPublication

Overlay - Static variable in class org.jdesktop.swingx.graphics.BlendComposite