pt.uminho.anote2.aibench.resources.datastructures.kegg
Class KeggGenesExtension

java.lang.Object
  pt.uminho.anote2.datastructures.report.resources.PortResourceUpdateReport
      pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.DictionaryLoaderHelp
          pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg.Kegg
              pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg.KeggGenes
                  pt.uminho.anote2.aibench.resources.datastructures.kegg.KeggGenesExtension

All Implemented Interfaces:

IDicionaryFlatFilesLoader, IDictionaryLoader

public class KeggGenesExtension
extends KeggGenes

Constructor Summary

KeggGenesExtension(IDictionary dictionary, boolean cancel, TimeLeftProgress progress)

Method Summary

IResourceUpdateReport	loadTermsFromFile(java.io.File file, java.util.Properties prop)
void	setcancel(boolean cancel)

Methods inherited from class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg.KeggGenes

checkFile, finTerm, loadFileGenes

Methods inherited from class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.kegg.Kegg

checkAllFile, findSyn, finTerm, getDictionary, getExternalID, getFindEntity, loadFileCoumpounds, loadFileEnzymes, organismMatching

Methods inherited from class pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.DictionaryLoaderHelp

addTermsAndSyn, addTermsAndSyn, getEntityClass, getNextResourceElementID, getOtherID, getResource, getSourceID, setEntityClass, setNextResourceElementID, setResource, setSourceID

Methods inherited from class pt.uminho.anote2.datastructures.report.resources.PortResourceUpdateReport

getReport, setReport

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface pt.uminho.anote2.resource.dictionary.IDictionaryLoader

getDictionary, getReport

Constructor Detail

KeggGenesExtension

public KeggGenesExtension(IDictionary dictionary,
                          boolean cancel,
                          TimeLeftProgress progress)

Method Detail

setcancel

public void setcancel(boolean cancel)

Specified by:

setcancel in interface IDictionaryLoader

Overrides:

setcancel in class KeggGenes

loadTermsFromFile

public IResourceUpdateReport loadTermsFromFile(java.io.File file,
                                               java.util.Properties prop)

Specified by:

loadTermsFromFile in interface IDicionaryFlatFilesLoader

Overrides:

loadTermsFromFile in class KeggGenes