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| org.jdesktop.* |
|---|
| org.jdesktop.swingx.AbstractPatternPanel | ||
|---|---|---|
public static final java.lang.String |
MATCH_ACTION_COMMAND |
"match" |
public static final java.lang.String |
SEARCH_FIELD_LABEL |
"searchFieldLabel" |
public static final java.lang.String |
SEARCH_FIELD_MNEMONIC |
"searchFieldLabel.mnemonic" |
public static final java.lang.String |
SEARCH_TITLE |
"searchTitle" |
| org.jdesktop.swingx.JXBusyLabel | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"BusyLabelUI" |
| org.jdesktop.swingx.JXCollapsiblePane | ||
|---|---|---|
public static final java.lang.String |
ANIMATION_STATE_KEY |
"animationState" |
public static final java.lang.String |
COLLAPSE_ICON |
"collapseIcon" |
public static final java.lang.String |
EXPAND_ICON |
"expandIcon" |
public static final java.lang.String |
TOGGLE_ACTION |
"toggle" |
| org.jdesktop.swingx.JXDatePicker | ||
|---|---|---|
public static final java.lang.String |
CANCEL_KEY |
"datePickerCancel" |
public static final java.lang.String |
COMMIT_KEY |
"datePickerCommit" |
public static final java.lang.String |
EDITOR |
"editor" |
public static final java.lang.String |
HOME_COMMIT_KEY |
"commitHome" |
public static final java.lang.String |
HOME_NAVIGATE_KEY |
"navigateHome" |
public static final java.lang.String |
LINK_PANEL |
"linkPanel" |
public static final java.lang.String |
MONTH_VIEW |
"monthView" |
public static final java.lang.String |
uiClassID |
"DatePickerUI" |
| org.jdesktop.swingx.JXDialog | ||
|---|---|---|
public static final java.lang.String |
CLOSE_ACTION_COMMAND |
"close" |
public static final java.lang.String |
EXECUTE_ACTION_COMMAND |
"execute" |
public static final java.lang.String |
UIPREFIX |
"XDialog." |
| org.jdesktop.swingx.JXErrorPane | ||
|---|---|---|
public static final java.lang.String |
FATAL_ACTION_KEY |
"fatal-action" |
public static final java.lang.String |
REPORT_ACTION_KEY |
"report-action" |
public static final java.lang.String |
uiClassID |
"ErrorPaneUI" |
| org.jdesktop.swingx.JXFindPanel | ||
|---|---|---|
public static final java.lang.String |
FIND_NEXT_ACTION_COMMAND |
"findNext" |
public static final java.lang.String |
FIND_PREVIOUS_ACTION_COMMAND |
"findPrevious" |
| org.jdesktop.swingx.JXHeader | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"HeaderUI" |
| org.jdesktop.swingx.JXHyperlink | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"HyperlinkUI" |
| org.jdesktop.swingx.JXLabel | ||
|---|---|---|
public static final double |
INVERTED |
3.141592653589793 |
public static final double |
NORMAL |
0.0 |
public static final double |
VERTICAL_LEFT |
4.71238898038469 |
public static final double |
VERTICAL_RIGHT |
1.5707963267948966 |
| org.jdesktop.swingx.JXList | ||
|---|---|---|
public static final java.lang.String |
EXECUTE_BUTTON_ACTIONCOMMAND |
"executeButtonAction" |
| org.jdesktop.swingx.JXLoginPane | ||
|---|---|---|
public static final java.lang.String |
CANCEL_LOGIN_ACTION_COMMAND |
"cancel-login" |
public static final java.lang.String |
LOGIN_ACTION_COMMAND |
"login" |
public static final java.lang.String |
uiClassID |
"LoginPaneUI" |
| org.jdesktop.swingx.JXMonthView | ||
|---|---|---|
public static final java.lang.String |
BOX_PADDING_X |
"boxPaddingX" |
public static final java.lang.String |
BOX_PADDING_Y |
"boxPaddingY" |
public static final java.lang.String |
CANCEL_KEY |
"monthViewCancel" |
public static final java.lang.String |
COMMIT_KEY |
"monthViewCommit" |
public static final int |
DAYS_IN_WEEK |
7 |
public static final java.lang.String |
DAYS_OF_THE_WEEK |
"daysOfTheWeek" |
public static final java.lang.String |
FLAGGED_DATES |
"flaggedDates" |
public static final int |
MONTHS_IN_YEAR |
12 |
public static final java.lang.String |
SELECTION_MODEL |
"selectionModel" |
public static final java.lang.String |
TRAVERSABLE |
"traversable" |
public static final java.lang.String |
uiClassID |
"MonthViewUI" |
| org.jdesktop.swingx.JXMultiThumbSlider<E> | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"MultiThumbSliderUI" |
| org.jdesktop.swingx.JXSearchPanel | ||
|---|---|---|
public static final java.lang.String |
MATCH_RULE_ACTION_COMMAND |
"selectMatchRule" |
| org.jdesktop.swingx.JXStatusBar | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"StatusBarUI" |
| org.jdesktop.swingx.JXTable | ||
|---|---|---|
public static final java.lang.String |
FOCUS_NEXT_COMPONENT |
"focusNextComponent" |
public static final java.lang.String |
FOCUS_PREVIOUS_COMPONENT |
"focusPreviousComponent" |
public static final java.lang.String |
HORIZONTALSCROLL_ACTION_COMMAND |
"column.horizontalScroll" |
public static final java.lang.String |
MATCH_HIGHLIGHTER |
"match.highlighter" |
public static final java.lang.String |
PACKALL_ACTION_COMMAND |
"column.packAll" |
public static final java.lang.String |
PACKSELECTED_ACTION_COMMAND |
"column.packSelected" |
public static final java.lang.String |
UIPREFIX |
"JXTable." |
public static final java.lang.String |
USE_DTCR_COLORMEMORY_HACK |
"useDTCRColorMemoryHack" |
| org.jdesktop.swingx.JXTaskPane | ||
|---|---|---|
public static final java.lang.String |
ANIMATED_CHANGED_KEY |
"animated" |
public static final java.lang.String |
ICON_CHANGED_KEY |
"icon" |
public static final java.lang.String |
SCROLL_ON_EXPAND_CHANGED_KEY |
"scrollOnExpand" |
public static final java.lang.String |
SPECIAL_CHANGED_KEY |
"special" |
public static final java.lang.String |
TITLE_CHANGED_KEY |
"title" |
public static final java.lang.String |
uiClassID |
"swingx/TaskPaneUI" |
| org.jdesktop.swingx.JXTaskPaneContainer | ||
|---|---|---|
public static final java.lang.String |
uiClassID |
"swingx/TaskPaneContainerUI" |
| org.jdesktop.swingx.JXTipOfTheDay | ||
|---|---|---|
public static final java.lang.String |
CURRENT_TIP_CHANGED_KEY |
"currentTip" |
public static final java.lang.String |
PREFERENCE_KEY |
"ShowTipOnStartup" |
public static final java.lang.String |
uiClassID |
"swingx/TipOfTheDayUI" |
| org.jdesktop.swingx.JXTitledPanel | ||
|---|---|---|
public static final java.lang.String |
LEFT_DECORATION |
"JXTitledPanel.leftDecoration" |
public static final java.lang.String |
RIGHT_DECORATION |
"JXTitledPanel.rightDecoration" |
public static final java.lang.String |
uiClassID |
"TitledPanelUI" |
| org.jdesktop.swingx.JXTreeTable | ||
|---|---|---|
public static final java.lang.String |
DRAG_HACK_FLAG_KEY |
"treeTable.dragHackFlag" |
public static final java.lang.String |
DROP_HACK_FLAG_KEY |
"treeTable.dropHackFlag" |
| org.jdesktop.swingx.MultiSplitLayout | ||
|---|---|---|
public static final int |
DEFAULT_LAYOUT |
0 |
public static final int |
NO_MIN_SIZE_LAYOUT |
1 |
public static final int |
USER_MIN_SIZE_LAYOUT |
2 |
| org.jdesktop.swingx.StackLayout | ||
|---|---|---|
public static final java.lang.String |
BOTTOM |
"bottom" |
public static final java.lang.String |
TOP |
"top" |
| org.jdesktop.swingx.action.AbstractActionExt | ||
|---|---|---|
public static final java.lang.String |
GROUP |
"__Group__" |
public static final java.lang.String |
IS_STATE |
"__State__" |
public static final java.lang.String |
LARGE_ICON |
"__LargeIcon__" |
| org.jdesktop.swingx.calendar.CalendarUtils | ||
|---|---|---|
public static final int |
ONE_DAY |
86400000 |
public static final int |
ONE_HOUR |
3600000 |
public static final int |
ONE_MINUTE |
60000 |
public static final int |
THREE_HOURS |
10800000 |
| org.jdesktop.swingx.combobox.ListComboBoxModel<E> | ||
|---|---|---|
public static final java.lang.String |
UPDATE |
"update" |
| org.jdesktop.swingx.decorator.PatternPredicate | ||
|---|---|---|
public static final int |
ALL |
-1 |
| org.jdesktop.swingx.decorator.PipelineEvent | ||
|---|---|---|
public static final int |
CONTENTS_CHANGED |
0 |
public static final int |
SORT_ORDER_CHANGED |
1 |
| org.jdesktop.swingx.decorator.SearchPredicate | ||
|---|---|---|
public static final int |
ALL |
-1 |
public static final java.lang.String |
MATCH_ALL |
".*" |
| org.jdesktop.swingx.graphics.ReflectionRenderer | ||
|---|---|---|
public static final java.lang.String |
BLUR_ENABLED_CHANGED_PROPERTY |
"reflection_blur" |
public static final java.lang.String |
LENGTH_CHANGED_PROPERTY |
"reflection_length" |
public static final java.lang.String |
OPACITY_CHANGED_PROPERTY |
"reflection_opacity" |
| org.jdesktop.swingx.graphics.ShadowRenderer | ||
|---|---|---|
public static final java.lang.String |
COLOR_CHANGED_PROPERTY |
"shadow_color" |
public static final java.lang.String |
OPACITY_CHANGED_PROPERTY |
"shadow_opacity" |
public static final java.lang.String |
SIZE_CHANGED_PROPERTY |
"shadow_size" |
| org.jdesktop.swingx.hyperlink.AbstractHyperlinkAction<T> | ||
|---|---|---|
public static final java.lang.String |
VISITED_KEY |
"visited" |
| org.jdesktop.swingx.hyperlink.LinkModel | ||
|---|---|---|
public static final java.lang.String |
VISITED_PROPERTY |
"visited" |
| org.jdesktop.swingx.hyperlink.LinkModelAction<T extends LinkModel> | ||
|---|---|---|
public static final java.lang.String |
VISIT_ACTION |
"visit" |
| org.jdesktop.swingx.multisplitpane.DefaultSplitPaneModel | ||
|---|---|---|
public static final java.lang.String |
BOTTOM |
"bottom" |
public static final java.lang.String |
LEFT |
"left" |
public static final java.lang.String |
TOP |
"top" |
| org.jdesktop.swingx.plaf.basic.BasicDatePickerUI.EditorCancelAction | ||
|---|---|---|
public static final java.lang.String |
TEXT_CANCEL_KEY |
"reset-field-edit" |
| org.jdesktop.swingx.plaf.basic.BasicMonthViewUI | ||
|---|---|---|
public static final int |
MONTH_DOWN |
1 |
public static final int |
MONTH_UP |
2 |
| org.jdesktop.swingx.plaf.windows.WindowsLookAndFeelAddons | ||
|---|---|---|
public static final java.lang.String |
HOMESTEAD_VISUAL_STYLE |
"HomeStead" |
public static final java.lang.String |
SILVER_VISUAL_STYLE |
"Metallic" |
| org.jdesktop.swingx.rollover.RolloverController<T extends javax.swing.JComponent> | ||
|---|---|---|
public static final java.lang.String |
EXECUTE_BUTTON_ACTIONCOMMAND |
"executeButtonAction" |
| org.jdesktop.swingx.rollover.RolloverProducer | ||
|---|---|---|
public static final java.lang.String |
CLICKED_KEY |
"swingx.clicked" |
public static final java.lang.String |
ROLLOVER_KEY |
"swingx.rollover" |
| org.jdesktop.swingx.search.AbstractSearchable | ||
|---|---|---|
public static final java.lang.String |
MATCH_HIGHLIGHTER |
"match.highlighter" |
| org.jdesktop.swingx.search.PatternModel | ||
|---|---|---|
public static final java.lang.String |
MATCH_BACKWARDS_ACTION_COMMAND |
"backwardsSearch" |
public static final java.lang.String |
MATCH_CASE_ACTION_COMMAND |
"matchCase" |
public static final java.lang.String |
MATCH_INCREMENTAL_ACTION_COMMAND |
"matchIncremental" |
public static final java.lang.String |
MATCH_RULE_CONTAINS |
"contains" |
public static final java.lang.String |
MATCH_RULE_ENDSWITH |
"endsWith" |
public static final java.lang.String |
MATCH_RULE_EQUALS |
"equals" |
public static final java.lang.String |
MATCH_RULE_STARTSWITH |
"startsWith" |
public static final java.lang.String |
MATCH_WRAP_ACTION_COMMAND |
"wrapSearch" |
public static final java.lang.String |
REGEX_ANCHORED |
"anchored" |
public static final java.lang.String |
REGEX_MATCH_RULES |
"explicit" |
public static final java.lang.String |
REGEX_UNCHANGED |
"regex" |
public static final java.lang.String |
REGEX_WILDCARD |
"wildcard" |
public static final java.lang.String |
SEARCH_PREFIX |
"Search." |
| org.jdesktop.swingx.table.ColumnControlButton | ||
|---|---|---|
public static final java.lang.String |
COLUMN_CONTROL_BUTTON_ICON_KEY |
"ColumnControlButton.actionIcon" |
public static final java.lang.String |
COLUMN_CONTROL_BUTTON_MARGIN_KEY |
"ColumnControlButton.margin" |
public static final java.lang.String |
COLUMN_CONTROL_MARKER |
"column." |
| org.jdesktop.swingx.table.ColumnHeaderRenderer | ||
|---|---|---|
public static final java.lang.String |
DOWN_ICON_KEY |
"ColumnHeaderRenderer.downIcon" |
public static final java.lang.String |
METAL_BORDER_HACK |
"ColumnHeaderRenderer.metalBorderHack" |
public static final java.lang.String |
UP_ICON_KEY |
"ColumnHeaderRenderer.upIcon" |
public static final java.lang.String |
VISTA_BORDER_HACK |
"ColumnHeaderRenderer.vistaBorderHack" |
| org.jdesktop.swingx.util.JVM | ||
|---|---|---|
public static final int |
JDK1_0 |
10 |
public static final int |
JDK1_1 |
11 |
public static final int |
JDK1_2 |
12 |
public static final int |
JDK1_3 |
13 |
public static final int |
JDK1_4 |
14 |
public static final int |
JDK1_5 |
15 |
public static final int |
JDK1_6 |
16 |
public static final int |
JDK1_6N |
1610 |
public static final int |
JDK1_7 |
17 |
| org.jdesktop.swingx.util.Utilities | ||
|---|---|---|
public static final int |
OS_AIX |
64 |
public static final int |
OS_FREEBSD |
131072 |
public static final int |
OS_HP |
32 |
public static final int |
OS_IRIX |
128 |
public static final int |
OS_LINUX |
16 |
public static final int |
OS_MAC |
4096 |
public static final int |
OS_OS2 |
2048 |
public static final int |
OS_OTHER |
65536 |
public static final int |
OS_SOLARIS |
8 |
public static final int |
OS_SUNOS |
256 |
public static final int |
OS_TRU64 |
512 |
public static final int |
OS_UNIX_MASK |
136184 |
public static final int |
OS_VMS |
16384 |
public static final int |
OS_WIN_OTHER |
32768 |
public static final int |
OS_WIN2000 |
8192 |
public static final int |
OS_WIN95 |
2 |
public static final int |
OS_WIN98 |
4 |
public static final int |
OS_WINDOWS_MASK |
40967 |
public static final int |
OS_WINNT |
1 |
public static final int |
TYPICAL_WINDOWS_TASKBAR_HEIGHT |
27 |
| pt.uminho.* |
|---|
| pt.uminho.anote2.aibench.curator.datastructures.ANoteDocument | ||
|---|---|---|
public static final java.lang.String |
SEPARATOR |
"[ \'<>/(),\n\\.]+" |
| pt.uminho.anote2.aibench.curator.documentstructuring.PieceToSearch | ||
|---|---|---|
public static final int |
MAXWORDSIZE |
50 |
| pt.uminho.anote2.aibench.curator.utils.ParsingUtils | ||
|---|---|---|
public static final java.lang.String |
BEGINING_ENTER |
"^(\\s*(<br/>)\\s*)+" |
public static final java.lang.String |
BEGINING_PARAGRAPH |
"((\\s)*<PARAGRAPH>(\\s)*)+" |
public static final java.lang.String |
DOUBLE_ENTER |
"(\\s)*<br/>(\\s)*<br/>(\\s)*" |
public static final java.lang.String |
END_ENTER |
"(\\s*(<br/>)\\s*)+$" |
public static final java.lang.String |
END_PARAGRAPH |
"((\\s)*</PARAGRAPH>(\\s)*)+" |
public static final java.lang.String |
ENTER_MANDATORY |
"(\\s*(<br/>)\\s*)+" |
public static final java.lang.String |
ENTER_OPTIONAL |
"(\\s*(<br/>)\\s*)*" |
public static final java.lang.String |
FONT_END |
"</b></FONT>" |
public static final java.lang.String |
FONT_START |
"<FONT COLOR=[^>]+><b>" |
| pt.uminho.anote2.aibench.loadsave.gui.SaveGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.ner.settings.NERLexicalResourcesDefaultSettings | ||
|---|---|---|
public static final java.lang.String |
CASE_SENSITIVE |
"NER.LexicalResources.CaseSensitive" |
public static final java.lang.String |
LEXICAL_RESOURCE_STOPWORDS_ID |
"NER.LexicalResources.StopWords" |
public static final java.lang.String |
NORMALIZATION |
"NER.LexicalResources.Normalization" |
public static final java.lang.String |
PRE_PROCESSING |
"NER.LexicalResources.PreProcessing" |
public static final java.lang.String |
USE_PARTIAL_MATCH_WITH_DICTIONARIES |
"NER.LexicalResources.PartialMatchWithDictionaries" |
| pt.uminho.anote2.aibench.resources.datastructures.ontologies.OBOOntologyExtensionv1p0 | ||
|---|---|---|
public static final java.lang.String |
version |
"1.0" |
| pt.uminho.anote2.aibench.resources.gui.ImportDictionaryTermsFromCSVFileGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.resources.gui.ImportLexicalWordTermsFromCSVFileGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.resources.gui.ImportLookupTermsFromCSVFileGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.resources.gui.OntologyOBO12LoaderGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.resources.gui.OntologyOBOLoaderGUI | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE |
"choose file" |
| pt.uminho.anote2.aibench.utils.conf.propertiesmanager.OkCancelMiniPanel | ||
|---|---|---|
public static final java.lang.String |
CANCEL_BUTTON_ACTION_COMMAND |
"cancelButtonActionCommand" |
public static final java.lang.String |
OK_BUTTON_ACTION_COMMAND |
"okButtonActionCommand" |
| pt.uminho.anote2.carrot.linkage.datastructures.ClusterAlgorithmsFields | ||
|---|---|---|
public static final int |
kmeansClusterCountDefaultValue |
25 |
public static final int |
kmeansClusterCountMax |
10000 |
public static final int |
kmeansClusterCountMin |
2 |
public static final int |
kmeansClusterCountStep |
1 |
public static final int |
kmeansClusterLabelCountDefaultValue |
3 |
public static final int |
kmeansClusterLabelCountMax |
10 |
public static final int |
kmeansClusterLabelCountMin |
1 |
public static final int |
kmeansClusterLabelCountStep |
1 |
public static final int |
kmeansClusterMaxIterationsDefaultValue |
15 |
public static final boolean |
kmeansClusterMaxIterationsDimensionalityReduction |
true |
public static final int |
kmeansClusterMaxIterationsMax |
10000 |
public static final int |
kmeansClusterMaxIterationsMin |
1 |
public static final int |
kmeansClusterMaxIterationsStep |
1 |
public static final int |
kmeansClusterPartitionCountDefaultValue |
2 |
public static final int |
kmeansClusterPartitionCountMax |
10 |
public static final int |
kmeansClusterPartitionCountMin |
2 |
public static final int |
kmeansClusterPartitionCountStep |
1 |
public static final int |
LingoDesiredClusterCountBaseDefaultValue |
30 |
public static final int |
LingoDesiredClusterCountBaseMax |
100 |
public static final int |
LingoDesiredClusterCountBaseMin |
2 |
public static final int |
LingoDesiredClusterCountBaseStep |
1 |
public static final int |
LingoScoreWeightDefaultValue |
0 |
public static final int |
LingoScoreWeightDivisionNumber |
10 |
public static final int |
LingoScoreWeightMax |
10 |
public static final int |
LingoScoreWeightMin |
0 |
public static final int |
LingoScoreWeightStep |
1 |
public static final boolean |
LingoUSeQueryInformation |
true |
public static final int |
STCDocumentCountBoostDefaultValue |
1 |
public static final int |
STCDocumentCountBoostMax |
10000 |
public static final int |
STCDocumentCountBoostMin |
0 |
public static final int |
STCDocumentCountBoostStep |
1 |
public static final int |
STCMaxBaseClustersDefaultValue |
300 |
public static final int |
STCMaxBaseClustersMax |
10000 |
public static final int |
STCMaxBaseClustersMin |
2 |
public static final int |
STCMaxBaseClustersStep |
1 |
public static final int |
STCMinBaseClusterScoreDefaultValue |
2 |
public static final int |
STCMinBaseClusterScoreMax |
10 |
public static final int |
STCMinBaseClusterScoreMin |
0 |
public static final int |
STCMinBaseClusterScoreStep |
2 |
public static final int |
STCMinBaseClusterSizeDefaultValue |
2 |
public static final int |
STCMinBaseClusterSizeMax |
20 |
public static final int |
STCMinBaseClusterSizeMin |
2 |
public static final int |
STCMinBaseClusterSizeStep |
1 |
public static final int |
STCOptimalPhraseLengthDefaultValue |
3 |
public static final int |
STCOptimalPhraseLengthMax |
10000 |
public static final int |
STCOptimalPhraseLengthMin |
1 |
public static final int |
STCOptimalPhraseLengthStep |
1 |
public static final int |
STCScoreWeightDefaultValue |
0 |
public static final int |
STCScoreWeightDivisionNumber |
10 |
public static final int |
STCScoreWeightMax |
10 |
public static final int |
STCScoreWeightMin |
0 |
public static final int |
STCScoreWeightStep |
1 |
public static final double |
STCSingleTermBoostDefaultValue |
0.5 |
public static final double |
STCSingleTermBoostMax |
10000.0 |
public static final double |
STCSingleTermBoostMin |
0.0 |
public static final double |
STCSingleTermBoostStep |
0.5 |
public static final boolean |
STCUseQueryInformation |
true |
| pt.uminho.anote2.carrot.linkage.datastructures.ClusterAlgorithmsPropertiesNames | ||
|---|---|---|
public static final java.lang.String |
clusterCount |
"clusterCount" |
public static final java.lang.String |
desiredClusterCountBase |
"desiredClusterCountBase" |
public static final java.lang.String |
documentCountBoost |
"documentCountBoost" |
public static final java.lang.String |
labelCount |
"labelCount" |
public static final java.lang.String |
maxBaseClusters |
"maxBaseClusters" |
public static final java.lang.String |
maxIterations |
"maxIterations" |
public static final java.lang.String |
minBaseClusterScore |
"minBaseClusterScore" |
public static final java.lang.String |
minBaseClusterSize |
"minBaseClusterSize" |
public static final java.lang.String |
optimalPhraseLength |
"optimalPhraseLength" |
public static final java.lang.String |
partitionCount |
"partitionCount" |
public static final java.lang.String |
queryInformation |
"usequeryinformation" |
public static final java.lang.String |
scoreWeight |
"scoreWeight" |
public static final java.lang.String |
singleTermBoost |
"singleTermBoost" |
public static final java.lang.String |
useDimensionalityReduction |
"useDimensionalityReduction" |
| pt.uminho.anote2.datastructures.annotation.re.EventDirectionally | ||
|---|---|---|
public static final int |
direct |
0 |
public static final int |
indifferent |
3 |
public static final int |
indirect |
1 |
public static final int |
unknown |
2 |
| pt.uminho.anote2.datastructures.annotation.re.EventPolarity | ||
|---|---|---|
public static final int |
conditional |
1 |
public static final int |
negative |
0 |
public static final int |
positive |
2 |
public static final int |
unknown |
3 |
| pt.uminho.anote2.datastructures.database.ADatabase | ||
|---|---|---|
public static final long |
timeout |
10000000L |
| pt.uminho.anote2.datastructures.database.queries.QueriesGeneral | ||
|---|---|---|
public static final java.lang.String |
getAllSources |
"SELECT idsources,source_name FROM sources " |
public static final java.lang.String |
getDatabaseVersion |
"SELECT MAX(version) FROM version " |
public static final java.lang.String |
getTableInformation |
"SHOW TABLE STATUS LIKE ? " |
public static final java.lang.String |
insertClassColor |
"INSERT INTO classes_colors VALUES (?,?) " |
public static final java.lang.String |
insertNewVersion |
"INSERT INTO version (version,date,comments) VALUES (?,?,?)" |
public static final java.lang.String |
selectClassColor |
"SELECT color FROM classes_colors WHERE classes_idclasses=? " |
public static final java.lang.String |
updateColor |
"UPDATE classes_colors SET color=? WHERE classes_idclasses=? " |
| pt.uminho.anote2.datastructures.database.queries.clusters.QueriesClusters | ||
|---|---|---|
public static final java.lang.String |
inativeClusterProcess |
"UPDATE clusters_process SET active=0 WHERE id=? " |
public static final java.lang.String |
insertCluster |
"INSERT INTO clusters_process (description) VALUES(?) " |
public static final java.lang.String |
insertClusterLabel |
"INSERT INTO clusters_labels (name,score) VALUES (?,?) " |
public static final java.lang.String |
insertClusterLabelDocument |
"INSERT INTO clusters_labels_documents (clusters_labels_id,publications_id,queries_idqueries) VALUES(?,?,?) " |
public static final java.lang.String |
insertClusterLabelProcess |
"INSERT INTO clusters_process_has_clusters_labels (clusters_labels_id,clusters_process_id) VALUES (?,?) " |
public static final java.lang.String |
insertClusterProperties |
"INSERT INTO clusters_properties (clusters_process_id,clusters_properties.key,clusters_properties.value) VALUES (?,?,?) " |
public static final java.lang.String |
insertQueryCluster |
"INSERT INTO queries_has_clusters_process (clusters_process_id,queries_idqueries) VALUES (?,?) " |
public static final java.lang.String |
selectClusterLabels |
"SELECT cl.clusters_labels_id,cld.name,cld.score FROM clusters_process_has_clusters_labels AS cl JOIN clusters_labels AS cld ON cl.clusters_labels_id=cld.id WHERE cl.clusters_process_id=? ORDER BY cld.score DESC " |
public static final java.lang.String |
selectClusterLabelsDocuments |
"SELECT publications_id FROM clusters_labels_documents WHERE clusters_labels_id=? " |
public static final java.lang.String |
selectClusterProperties |
"SELECT clusters_properties.key,clusters_properties.value FROM clusters_properties WHERE clusters_process_id=? " |
public static final java.lang.String |
selectQueryClusters |
"SELECT clusters_process_id,description FROM queries_has_clusters_process AS qh JOIN clusters_process AS cl ON cl.id=qh.clusters_process_id WHERE queries_idqueries=? AND active=1 " |
public static final java.lang.String |
selectQueryClustersID |
"SELECT * FROM clusters_process WHERE id=? AND active=1 " |
| pt.uminho.anote2.datastructures.database.queries.corpora.QueriesCorpora | ||
|---|---|---|
public static final java.lang.String |
corpusSize |
"SELECT COUNT(*) FROM corpus_has_publications WHERE corpus_idcorpus=? " |
public static final java.lang.String |
inactiveCorpus |
"UPDATE corpus SET active=0 WHERE idcorpus=? " |
public static final java.lang.String |
insertCorpus |
"INSERT INTO corpus (name) VALUES(?)" |
public static final java.lang.String |
insertCorpusProcess |
"INSERT INTO corpus_has_processes(corpus_idcorpus,processes_idprocesses) VALUES (?,?) " |
public static final java.lang.String |
insertCorpusProperties |
"INSERT INTO corpus_properties VALUES(?,?,?)" |
public static final java.lang.String |
insertCorpusPublication |
"INSERT INTO corpus_has_publications (corpus_idcorpus,publications_id) VALUES(?,?)" |
public static final java.lang.String |
selectCorpora |
"SELECT * FROM corpus WHERE active=1 ORDER BY idcorpus DESC " |
public static final java.lang.String |
selectCorporaInformationByID |
"SELECT * FROM corpus WHERE idcorpus=? AND active=1" |
public static final java.lang.String |
selectCorpusProcesses |
"SELECT idprocesses, name, type FROM processes p JOIN corpus_has_processes c ON p.idprocesses = c.processes_idprocesses JOIN processes_type t ON p.processes_type_idprocesses_type = t.idprocesses_type WHERE c.corpus_idcorpus=? AND p.active=1 " |
public static final java.lang.String |
selectCorpusProperties |
"SELECT * FROM corpus_properties WHERE corpus_idcorpus=?" |
public static final java.lang.String |
selectCorpusPublications |
"SELECT publications.id, publications.other_id,publications.title, publications.authors, publications.date, publications.status, publications.journal, publications.volume, publications.issue, publications.pages,publications.external_links, publications.abstract, publications.available_pdf FROM corpus_has_publications AS q JOIN publications ON (q.publications_id=id) WHERE q.corpus_idcorpus=? " |
public static final java.lang.String |
selectCountCorpusProcesses |
"SELECT COUNT(*) FROM processes p JOIN corpus_has_processes c ON p.idprocesses = c.processes_idprocesses WHERE c.corpus_idcorpus=? AND p.active=1 " |
public static final java.lang.String |
selectProcesses |
"SELECT idprocesses,name,type FROM processes t JOIN processes_type s ON t.processes_type_idprocesses_type = s.idprocesses_type WHERE active=1 " |
public static final java.lang.String |
selectProcessInfoByID |
"SELECT idprocesses, name, type FROM processes p JOIN processes_type t ON p.processes_type_idprocesses_type = t.idprocesses_type WHERE idprocesses = ? AND active=1" |
public static final java.lang.String |
selectProcessProperties |
"SELECT property_name,property_value FROM process_properties WHERE processes_idprocesses=? " |
public static final java.lang.String |
selectPublicationsbyID |
"SELECT id, other_id,title,authors, date, status,journal, volume, issue, pages,external_links, abstract, available_pdf FROM publications WHERE id=? " |
| pt.uminho.anote2.datastructures.database.queries.corpora.QueriesExternalLinks | ||
|---|---|---|
public static final java.lang.String |
addMenuLink |
"INSERT INTO hypher_links_menu (menu_name,hypher_link_menu,icon,menu_level) VALUES(?,?,?,?) " |
public static final java.lang.String |
addSubMenuItemToMenu |
"INSERT INTO hypher_links_submenus VALUES(?,?) " |
public static final java.lang.String |
getLinkoutsForSource |
"SELECT hypher_link_menu FROM hypher_link_menu_source_association AS hl JOIN hypher_links_menu AS men ON men.id=hl.hypher_links_menu_id WHERE sources_idsources=? " |
public static final java.lang.String |
getMenuLinkageSources |
"SELECT sources_idsources FROM hypher_link_menu_source_association WHERE hypher_links_menu_id=? " |
public static final java.lang.String |
getprimaryMenu |
"SELECT id,menu_name,icon,hypher_link_menu,menu_level FROM hypher_links_menu WHERE menu_level=1 " |
public static final java.lang.String |
getprimaryMenuSubMEnus |
"SELECT sm.hypher_links_submenu_id,menu_name,icon,hypher_link_menu,menu_level FROM hypher_links_submenus sm JOIN hypher_links_menu me ON me.id=sm.hypher_links_submenu_id WHERE sm.hypher_links_menu_id=?" |
public static final java.lang.String |
removeAllMenuLinkages |
"DELETE FROM hypher_links_submenus WHERE hypher_links_menu_id=? OR hypher_links_submenu_id=? " |
public static final java.lang.String |
removeAllSourceLinkages |
"DELETE FROM hypher_link_menu_source_association WHERE hypher_links_menu_id=? " |
public static final java.lang.String |
removeMenuItemSourceLinkage |
"DELETE FROM hypher_link_menu_source_association WHERE hypher_links_menu_id=? AND sources_idsources=? " |
public static final java.lang.String |
removeMenuLink |
"DELETE FROM hypher_links_menu WHERE id=? " |
public static final java.lang.String |
superExternalIDCurator |
"SELECT external_id,sources_idsources FROM resource_elements_extenal_id JOIN resource_elements AS p ON (p.idresource_elements=resource_elements_extenal_id.resource_elements_idresource_elements) JOIN annotations AS q ON (p.idresource_elements=q.resource_elements_id) WHERE q.processes_idprocesses=? AND q.corpus_idcorpus=? AND q.publications_id=? AND q.start=? AND q.end=? " |
public static final java.lang.String |
updateMenuItem |
"UPDATE hypher_links_menu SET `menu_name` = ? , `hypher_link_menu` = ? , icon=? WHERE id=? " |
public static final java.lang.String |
updateMenuItemSourceLinkage |
"INSERT INTO hypher_link_menu_source_association VALUES(?,?) " |
| pt.uminho.anote2.datastructures.database.queries.documents.QueriesAnnotatedDocument | ||
|---|---|---|
public static final java.lang.String |
insertAnnotationProperties |
"INSERT INTO annotations_properties VALUES(?,?,?) " |
public static final java.lang.String |
insertAnnotationSide |
"INSERT IGNORE INTO annotations_side VALUES(?,?,?)" |
public static final java.lang.String |
insertEntityAnnotation |
"INSERT INTO annotations (processes_idprocesses,corpus_idcorpus, publications_id,start,end,element,resource_elements_id,normalization_form,classes_idclasses,type) VALUES (?,?,?,?,?,?,?,?,?,1)" |
public static final java.lang.String |
insertEventAnnotation |
"INSERT INTO annotations (processes_idprocesses,corpus_idcorpus, publications_id,start,end,element,resource_elements_id,normalization_form,classes_idclasses,type,classification_re,clue) VALUES (?,?,?,?,?,?,?,?,?,2,?,?)" |
public static final java.lang.String |
removeAnnotaionProperties |
"DELETE FROM annotation_propertiesWHERE idannotations=? AND property_name=? " |
public static final java.lang.String |
removeAnnotation |
"UPDATE annotations SET active=0 WHERE start=? AND end=? AND corpus_idcorpus=? AND processes_idprocesses=? AND publications_id=? AND active=1 " |
public static final java.lang.String |
removeAnnotationSide |
"DELETE FROM annotations_sideWHERE idannotation=? AND idannotation_sub=?" |
public static final java.lang.String |
selectEntityAnnotations |
"SELECT idannotations,start,end,element,resource_elements_id,normalization_form,classes_idclasses FROM annotations WHERE annotations.processes_idprocesses=? AND annotations.corpus_idcorpus=? AND annotations.publications_id=? AND type=\'ner\' AND active=1 ORDER BY start " |
public static final java.lang.String |
selectEventAnnotations |
"SELECT idannotations,start,end,clue,classification_re FROM annotations WHERE processes_idprocesses=? AND corpus_idcorpus=? AND publications_id=? AND type=\'re\' AND active=1 " |
public static final java.lang.String |
selectEventEntitiesAnnotations |
"SELECT q.idannotations,q.idannotations_sub,q.type FROM annotations_side AS q JOIN annotations AS p ON p.idannotations=q.idannotations WHERE p.processes_idprocesses=? AND p.corpus_idcorpus=? AND p.publications_id=? AND p.type=\'re\' AND p.active=1 " |
public static final java.lang.String |
selectEventProperties |
"SELECT q.idannotations,q.property_name,q.property_value FROM annotations_properties AS q JOIN annotations AS p ON p.idannotations=q.idannotations WHERE p.processes_idprocesses=? AND p.corpus_idcorpus=? AND p.publications_id=? AND p.type=\'re\' AND p.active=1 " |
public static final java.lang.String |
updateAnnotationProperties |
"UPDATE annotation_properties SET property_value=? WHERE idannotations=? AND property_name=? " |
public static final java.lang.String |
updateClassAnnotation |
"UPDATE annotations SET classes_idclasses=? , resource_elements_id=NULL WHERE start=? AND end=? AND corpus_idcorpus=? AND processes_idprocesses=? AND publications_id=? " |
| pt.uminho.anote2.datastructures.database.queries.documents.QueriesDocument | ||
|---|---|---|
public static final java.lang.String |
getPubFullText |
"SELECT publications.fulltext FROM publications WHERE id=?" |
public static final java.lang.String |
insertDocumentField |
"INSERT INTO publication_fields VALUES(?,?,?,?) " |
public static final java.lang.String |
insertRelevanceInDocInQuery |
"INSERT INTO document_relevance (publications_id,queries_idqueries,relevance) VALUES (?,?,?) " |
public static final java.lang.String |
removeDocumentField |
"REMOVE FROM publication_fields WHERE publication_id=? AND field=? " |
public static final java.lang.String |
removeRelevance |
"DELETE FROM document_relevance WHERE publications_id=? AND queries_idqueries=? " |
public static final java.lang.String |
selectPublicationRelevanceForQuery |
"SELECT publications_id, relevance FROM document_relevance WHERE queries_idqueries=?" |
public static final java.lang.String |
selectRelevancePublication |
"SELECT relevance FROM document_relevance WHERE publications_id =? AND queries_idqueries=? " |
public static final java.lang.String |
updateDocumentField |
"UPDATE publication_fileds SET field=? AND start=? AND end=? WHERE publication_id=? AND field=? " |
public static final java.lang.String |
updatePubFullText |
"UPDATE publications SET publications.fulltext=? WHERE id=? " |
public static final java.lang.String |
updateRelevanceDocInQuery |
"UPDATE document_relevance SET relevance=? WHERE queries_idqueries=? AND publications_id=?" |
| pt.uminho.anote2.datastructures.database.queries.documents.QueriesPublication | ||
|---|---|---|
public static final java.lang.String |
getIDOtherID |
"SELECT id FROM publications WHERE other_id=?" |
public static final java.lang.String |
insertIndetifierType |
"INSERT INTO publications_id_type (name) VALUES (?)" |
public static final java.lang.String |
insertPublicationOnQuery |
"INSERT INTO queries_has_publications SET queries_idqueries=? , publications_id=?" |
public static final java.lang.String |
insertPublications |
"INSERT INTO publications (other_id,title,authors,date,fulldate,type,status,journal,volume,issue,pages,abstract,publications_id_type_id_type) VALUES (?,?,?,?,?,?,?,?,?,?,?,?,?)" |
public static final java.lang.String |
otherIDPublications |
"SELECT other_id FROM publications" |
public static final java.lang.String |
selectAllPublicationQueryInfo |
"SELECT publications.id, publications.other_id, publications.title, publications.authors, publications.date, publications.status, publications.journal, publications.volume, publications.issue, publications.pages, publications.external_links, publications.abstract, publications.available_pdf, relevance FROM queries_has_publications AS q JOIN publications ON (q.publications_id=id) NATURAL LEFT JOIN document_relevance WHERE queries_idqueries=? " |
public static final java.lang.String |
selectIDAndPmidsForQuery |
"SELECT publications.id,publications.other_id FROM queries_has_publications join publications ON publications_id=id WHERE queries_idqueries=?" |
public static final java.lang.String |
selectPublication |
"SELECT publications.id , publications.other_id, publications.title, publications.authors, publications.date, publications.status, publications.journal, publications.volume, publications.issue, publications.pages, publications.external_links, publications.abstract, publications.available_pdf FROM publications WHERE publications.id=?" |
public static final java.lang.String |
selectPublicationIDForPublicationOtherID |
"SELECT id FROM publications WHERE other_id=? " |
public static final java.lang.String |
selectPublicationIndetifierTypeID |
"SELECT id_type FROM publications_id_type WHERE name=? " |
public static final java.lang.String |
selectPublicationsQueryExtra |
"SELECT publications.id , publications.other_id, publications.title, publications.authors, publications.date, publications.status, publications.journal, publications.volume, publications.issue, publications.pages, publications.external_links, publications.abstract, publications.available_pdf FROM queries_has_publications join publications ON publications_id=id WHERE queries_idqueries=? " |
public static final java.lang.String |
selectPublicationsResume |
"SELECT title,authors,type,fulldate,status,journal,volume,issue,pages,abstract,external_links FROM publications " |
public static final java.lang.String |
selectPublicationsTypeForPublication |
"SELECT name FROM publications_id_type AS q JOIN publications ON (q.id_type=publications_id_type_id_type) WHERE id=?" |
public static final java.lang.String |
selectPublicationType |
"SELECT name FROM publications_id_type AS q JOIN publications ON (q.id_type=publications_id_type_id_type) WHERE id=?" |
public static final java.lang.String |
updatePublication |
"UPDATE publications SET title=?, authors=?, date=?, fulldate=?, type=?, status=?, journal=?, volume=?, issue=?, pages=?, abstract=? WHERE other_id=? " |
public static final java.lang.String |
updatePublicationPDFavailable |
"UPDATE publications SET available_pdf=? WHERE other_id=?" |
| pt.uminho.anote2.datastructures.database.queries.process.QueriesIEProcess | ||
|---|---|---|
public static final java.lang.String |
selectAnnotationFilterByOffset |
"SELECT idannotations,start,end,element,resource_elements_id,normalization_form,classes_idclasses FROM annotations WHERE annotations.processes_idprocesses=? AND annotations.corpus_idcorpus=? AND annotations.publications_id=? AND type=\'ner\' AND start >=? AND start<=? AND active=1 " |
| pt.uminho.anote2.datastructures.database.queries.process.QueriesIRProcess | ||
|---|---|---|
public static final java.lang.String |
idQueryMax |
"SELECT max(idqueries) FROM queries " |
public static final java.lang.String |
inactiveQuery |
"UPDATE queries SET active=0 WHERE idqueries=? " |
public static final java.lang.String |
insertQueryProperties |
"INSERT INTO queries_properties (queries_idqueries, property_name, property_value) VALUES(?,?,?)" |
public static final java.lang.String |
selectQueriesInformationByID |
"SELECT idqueries,date,keywords,organism,matching_publications,available_abstracts, frompubmed FROM queries WHERE idqueries=? AND active=1" |
public static final java.lang.String |
selectQueryByID |
"SELECT q.idqueries, q.keywords,q.organism FROM queries q JOIN queries_has_publications p ON q.idqueries = p.queries_idqueries WHERE publications_id =? AND active=1" |
public static final java.lang.String |
selectQueryProperties |
"SELECT property_name,property_value FROM queries_properties WHERE queries_idqueries=? " |
public static final java.lang.String |
updateQueryInfo |
"UPDATE queries SET matching_publications=? , available_abstracts=? WHERE idqueries=? AND active=1" |
| pt.uminho.anote2.datastructures.database.queries.process.QueriesProcess | ||
|---|---|---|
public static final java.lang.String |
existProcessType |
"SELECT * FROM processes_type WHERE type=? " |
public static final java.lang.String |
getProcessDescription |
"SELECT name FROM processes WHERE idprocesses=?" |
public static final java.lang.String |
inactivateProcess |
"UPDATE processes SET active=0 WHERE idprocesses = ? " |
public static final java.lang.String |
insertProcess |
"INSERT INTO processes (processes_type_idprocesses_type,name) VALUES (?,?)" |
public static final java.lang.String |
insertProcessProperties |
"INSERT INTO process_properties (processes_idprocesses,property_name,property_value) VALUES (?,?,?)" |
public static final java.lang.String |
insertProcessType |
"INSERT INTO processes_type (type) VALUES(?) " |
public static final java.lang.String |
insertQueryFromOtherSources |
"INSERT INTO queries (date,keywords,matching_publications, available_abstracts,frompubmed) VALUES(?,?,?,?,0)" |
public static final java.lang.String |
insertQueryPubmed |
"INSERT INTO queries (date,keywords,organism) VALUES(?,?,?)" |
public static final java.lang.String |
removeAllAnnotationSides |
"DELETE IGNORE annotations_side,annotations FROM annotations_side INNER JOIN annotations WHERE annotations_side.idannotations=annotations.idannotations AND annotations.processes_idprocesses=? " |
public static final java.lang.String |
removeAllTerms |
"DELETE FROM annotations WHERE processes_idprocesses=? " |
public static final java.lang.String |
removeAllTermsProperties |
"DELETE IGNORE annotations_properties,annotations FROM annotations_properties INNER JOIN annotations WHERE annotations_properties.idannotations=annotations.idannotations AND annotations.processes_idprocesses=? " |
public static final java.lang.String |
removeProcess |
"DELETE FROM processes WHERE idprocesses=? " |
public static final java.lang.String |
removeProcessFromCorpus |
"DELETE FROM corpus_has_processes WHERE processes_idprocesses=? " |
public static final java.lang.String |
removeProcessProperties |
"DELETE FROM process_properties WHERE processes_idprocesses=? " |
public static final java.lang.String |
removeQuery |
"DELETE FROM queries WHERE idqueries=? " |
public static final java.lang.String |
removeQueryProperties |
"DELETE FROM queries_properties WHERE queries_idqueries=? " |
public static final java.lang.String |
removeQueryPublicationLinking |
"DELETE FROM queries_has_publications WHERE queries_idqueries=? " |
public static final java.lang.String |
selectLastQueriesPubmed |
"SELECT idqueries,date,keywords,organism,matching_publications, available_abstracts, frompubmed FROM queries ORDER BY idqueries DESC" |
public static final java.lang.String |
selectQueriesPubmed |
"SELECT idqueries,date,keywords,organism,matching_publications, available_abstracts, frompubmed FROM queries WHERE active=1 " |
| pt.uminho.anote2.datastructures.database.queries.process.ner.lexicalresources.QueriesNERHandRules | ||
|---|---|---|
public static final java.lang.String |
findDictionaryTerm |
"SELECT idresource_elements FROM resource_elements WHERE resources_idresources=? AND element=? AND active=1 AND classes_idclasses=? " |
public static final java.lang.String |
findDictionaryTermCaseSensitive |
"SELECT idresource_elements FROM resource_elements WHERE resources_idresources=? AND element LIKE binary (?) AND active=1 AND classes_idclasses=? " |
public static final java.lang.String |
findDictionaryTermSynonym |
"SELECT idresource_elements,classes_idclasses FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND synonym=? AND t.active=1 AND s.active=1 AND t.classes_idclasses=? " |
public static final java.lang.String |
findDictionaryTermSynonymCaseSensitive |
"SELECT idresource_elements,classes_idclasses FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND synonym LIKE binary (?) AND t.active=1 AND s.active=1 AND t.classes_idclasses=? " |
| pt.uminho.anote2.datastructures.database.queries.process.re.info.QueriesREToNetwork | ||
|---|---|---|
public static final java.lang.String |
getAllClassesSide |
"SELECT classes_idclasses FROM annotations_side AS side JOIN annotations AS annot ON annot.idannotations=side.idannotations_sub WHERE side.type=? GROUP BY annot.classes_idclasses " |
public static final java.lang.String |
getAllLemmas |
"SELECT property_value FROM annotations_properties WHERE property_name=\'lemma\' GROUP BY property_value" |
| pt.uminho.anote2.datastructures.database.queries.process.Stats.NERQueriesStats | ||
|---|---|---|
public static final java.lang.String |
classNumberAnnotationsCorpus |
"SELECT c.class,count(*) FROM annotations AS a JOIN classes AS c ON a.classes_idclasses=c.idclasses WHERE a.processes_idprocesses=? AND a.corpus_idcorpus=? AND active=1 GROUP BY c.class " |
public static final java.lang.String |
classNumberAnnotationsPublication |
"Select classes_idclasses,COUNT(classes_idclasses) FROM annotations WHERE processes_idprocesses=? AND corpus_idcorpus=? AND publications_id=? AND type=\'ner\' AND active=1 GROUP BY classes_idclasses " |
public static final java.lang.String |
documentClassTermFrequence |
"SELECT element,COUNT(element) FROM annotations WHERE processes_idprocesses=? AND corpus_idcorpus=? AND classes_idclasses=? AND publications_id=? AND active=1 GROUP BY element " |
public static final java.lang.String |
entitiesAllProcessAnnottions |
"Select COUNT(*) FROM annotations AS a WHERE a.processes_idprocesses=? AND type=\'ner\' AND active=1 " |
public static final java.lang.String |
processEntitiesClassStats |
"SELECT cla.class,COUNT(*) FROM annotations AS annot JOIN classes AS cla ON cla.idclasses = annot.classes_idclasses WHERE type=\'ner\' AND processes_idprocesses=? GROUP BY classes_idclasses " |
public static final java.lang.String |
processRelationCardinalities |
"SELECT annot.idannotations,side.type,COUNT(*) FROM annotations_side AS side JOIN annotations AS annot ON side.idannotations=annot.idannotations WHERE annot.processes_idprocesses = ? AND annot.type=\'re\' GROUP BY annot.idannotations,side.type ORDER BY annot.idannotations " |
public static final java.lang.String |
processRelationProperty |
"SELECT property_value,COUNT(*) FROM annotations_properties AS prop JOIN annotations AS annot ON annot.idannotations=prop.idannotations WHERE annot.processes_idprocesses = ? AND prop.property_name=? GROUP BY property_value " |
public static final java.lang.String |
processRelationsLemmas |
"SELECT property_value,COUNT(*) FROM annotations_properties AS prop JOIN annotations AS annot ON annot.idannotations=prop.idannotations WHERE property_name=\'lemma\' AND annot.processes_idprocesses=? and annot.type=\'re\' GROUP BY property_value " |
public static final java.lang.String |
processRelationsTypes |
"SELECT annot.idannotations,sub_annot.idannotations,side.type,sub_annot.classes_idclasses FROM annotations_side AS side JOIN annotations AS annot ON side.idannotations=annot.idannotations JOIN annotations AS sub_annot ON side.idannotations_sub=sub_annot.idannotations WHERE annot.processes_idprocesses = ? AND annot.type = \'re\' AND sub_annot.type = \'ner\' ORDER BY annot.idannotations " |
public static final java.lang.String |
relationsAllProcessAnnottions |
"Select COUNT(*) FROM annotations AS a WHERE a.processes_idprocesses=? AND type=\'re\' AND active=1 " |
public static final java.lang.String |
relationsAnnotations |
"Select COUNT(*) FROM annotations AS a WHERE a.processes_idprocesses=? AND a.corpus_idcorpus=? AND a.publications_id=? AND type=\'re\' AND active=1 " |
public static final java.lang.String |
termDocumentFrequence |
"SELECT publications_id,COUNT(element) FROM annotations WHERE processes_idprocesses=? AND corpus_idcorpus=? AND classes_idclasses=? AND element=? AND active=1 GROUP BY publications_id " |
| pt.uminho.anote2.datastructures.database.queries.resources.QueriesResources | ||
|---|---|---|
public static final java.lang.String |
existElementInResource |
"SELECT idresource_elements,classes_idclasses FROM resource_elements WHERE resources_idresources=? AND element LIKE binary (?) AND active=1" |
public static final java.lang.String |
existElementSynonyms |
"SELECT idresource_elements,classes_idclasses FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND synonym LIKE binary (?) AND t.active=1 AND s.active=1 " |
public static final java.lang.String |
existExternalIDForTem |
"SELECT * FROM resource_elements_extenal_id WHERE resource_elements_idresource_elements=? AND external_id=? AND sources_idsources=? " |
public static final java.lang.String |
findPartialMathingInDictionaries |
"SELECT * FROM synonyms AS syn JOIN resource_elements AS elem ON syn.resource_elements_idresource_elements=elem.idresource_elements WHERE elem.resources_idresources=? AND elem.classes_idclasses = ? AND syn.synonym = BINARY ? " |
public static final java.lang.String |
findPartialMathingInDictionariesCaseAndNoWholeWord |
"SELECT * FROM synonyms AS syn JOIN resource_elements AS elem ON syn.resource_elements_idresource_elements=elem.idresource_elements WHERE elem.resources_idresources=? AND elem.classes_idclasses = ? AND syn.synonym LIKE BINARY ? " |
public static final java.lang.String |
findPartialMathingInDictionariesNoMatchCaseAndNoWholeWord |
"SELECT * FROM synonyms AS syn JOIN resource_elements AS elem ON syn.resource_elements_idresource_elements=elem.idresource_elements WHERE elem.resources_idresources=? AND elem.classes_idclasses = ? AND syn.synonym LIKE ? " |
public static final java.lang.String |
getallExternalIdsMerge |
"SELECT res.idresource_elements,ext.external_id,ext.sources_idsources,sc.source_name FROM resource_elements_extenal_id AS ext JOIN resource_elements AS res ON res.idresource_elements = ext.resource_elements_idresource_elements JOIN sources AS sc ON sc.idsources=ext.sources_idsources WHERE res.resources_idresources=? AND res.active=1 AND ext.active=1" |
public static final java.lang.String |
getallSynonymsMerg |
"SELECT syn.resource_elements_idresource_elements,syn.synonym FROM synonyms AS syn JOIN resource_elements AS res ON res.idresource_elements=syn.resource_elements_idresource_elements WHERE res.resources_idresources=? AND res.active=1 AND syn.active=1 " |
public static final java.lang.String |
getClassesIDForClasseName |
"SELECT idclasses FROM classes WHERE class=?" |
public static final java.lang.String |
getClassIDForClass |
"SELECT idclasses FROM classes WHERE class=?" |
public static final java.lang.String |
getElementsSynonyms |
"SELECT s.synonym,t.classes_idclasses,t.idresource_elements FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND s.active=1 AND t.active=1" |
public static final java.lang.String |
getResourceElementtype |
"SELECT rt.type FROM resource_elements AS re JOIN resources AS res ON re.resources_idresources=res.idresources JOIN resources_type AS rt ON rt.idresources_type=res.resources_type_idresources_type WHERE re.idresource_elements=? " |
public static final java.lang.String |
getResourcesInfo |
"SELECT idresources,type,name,note,active FROM resources AS q JOIN resources_type ON (q.resources_type_idresources_type=resources_type.idresources_type) WHERE idresources=? " |
public static final java.lang.String |
getTermResources |
"SELECT res.idresources,res.name,res.note,rt.type FROM resource_elements AS re JOIN resources AS res ON re.resources_idresources=res.idresources JOIN resources_type AS rt ON rt.idresources_type=res.resources_type_idresources_type WHERE re.idresource_elements=? " |
public static final java.lang.String |
inactiveElement |
"UPDATE resource_elements SET active=0 WHERE idresource_elements=?" |
public static final java.lang.String |
inactiveResource |
"UPDATE resources SET active=0 WHERE idresources=? " |
public static final java.lang.String |
insertClas |
"INSERT INTO classes (class) VALUES (?)" |
public static final java.lang.String |
insertElement |
"INSERT INTO resource_elements (element,classes_idclasses,resources_idresources) VALUES (?,?,?)" |
public static final java.lang.String |
insertElementExternalID |
"INSERT INTO resource_elements_extenal_id (resource_elements_idresource_elements,resource_elements_resources_idresources,external_id,sources_idsources) VALUES (?,?,?,?)" |
public static final java.lang.String |
insertElementSynonyms |
"INSERT INTO synonyms (resource_elements_idresource_elements,synonym) VALUES (?,?)" |
public static final java.lang.String |
insertRelationType |
"INSERT INTO relation_type (type) VALUES(?)" |
public static final java.lang.String |
insertResource |
"INSERT INTO resources (name,resources_type_idresources_type,note) VALUES (?,?,?)" |
public static final java.lang.String |
insertResourceClassContent |
"INSERT resources_content (resources_idresources,classes_idclasses) VALUES (?,?) " |
public static final java.lang.String |
insertResourceElementRelation |
"INSERT IGNORE resource_elements_relation (idresource_elements_a,idresource_elements_b,relation_type_idrelation_type) VALUES(?,?,?)" |
public static final java.lang.String |
insertResourceType |
"INSERT INTO resources_type (type) VALUES(?) " |
public static final java.lang.String |
insertSource |
"INSERT INTO sources (source_name) VALUES(?) " |
public static final java.lang.String |
removeClassContent |
"DELETE FROM resources_content WHERE resources_idresources=? AND classes_idclasses=? " |
public static final java.lang.String |
removeElement |
"DELETE FROM resource_elements WHERE idresource_elements=? AND active=1 " |
public static final java.lang.String |
removeElementSynomym |
"UPDATE synonyms SET active=0 WHERE resource_elements_idresource_elements=? AND synonym=? AND active=1 " |
public static final java.lang.String |
removeElementSynonyms |
"UPDATE synonyms SET active=0 WHERE resource_elements_idresource_elements=? AND active=1 " |
public static final java.lang.String |
selectAllClasses |
"SELECT * FROM classes " |
public static final java.lang.String |
selectAllResourceElement |
"SELECT * FROM resource_elements WHERE resources_idresources=? AND active=1 ORDER BY idresource_elements " |
public static final java.lang.String |
selectAllresources |
"SELECT idresources,type,name,note FROM resources AS q JOIN resources_type ON (q.resources_type_idresources_type=resources_type.idresources_type) WHERE active=1 " |
public static final java.lang.String |
selectElementByIDWihoutActiveFilter |
"SELECT * FROM resource_elements WHERE idresource_elements=? " |
public static final java.lang.String |
selectElementClass |
"SELECT idresource_elements,element FROM resource_elements WHERE resources_idresources=? AND classes_idclasses=? AND active=1 " |
public static final java.lang.String |
selectElementExternalID |
"SELECT * FROM resource_elements JOIN resource_elements_extenal_id ON resource_elements_extenal_id.resource_elements_idresource_elements=resource_elements.idresource_elements WHERE resources_idresources=? AND resource_elements.active=1" |
public static final java.lang.String |
selectElementSynByID |
"SELECT resource_elements_idresource_elements,synonym FROM synonyms WHERE resource_elements_idresource_elements=? AND active=1" |
public static final java.lang.String |
selectRelationsOntology |
"SELECT t.idresource_elements_a, t.idresource_elements_b FROM resource_elements_relation t JOIN resource_elements s ON t.idresource_elements_a = s.idresource_elements WHERE s.resources_idresources=? " |
public static final java.lang.String |
selectRelationTypeID |
"SELECT idrelation_type FROM relation_type WHERE type=? " |
public static final java.lang.String |
selectResourceclassContent |
"SELECT classes_idclasses,classes.class FROM resources_content AS q JOIN classes ON (q.classes_idclasses=classes.idclasses) WHERE resources_idresources=?" |
public static final java.lang.String |
selectResourceClassesContent |
"SELECT classes_idclasses FROM resources_content WHERE resources_idresources=? " |
public static final java.lang.String |
selectResourceElement |
"SELECT element, idresource_elements FROM resource_elements WHERE resources_idresources=? AND active=1 " |
public static final java.lang.String |
selectResourceElementAndClass |
"SELECT element,classes.class FROM resource_elements AS q JOIN classes ON (q.classes_idclasses=classes.idclasses) WHERE resources_idresources=? AND q.active=1 " |
public static final java.lang.String |
selectResourceElementCount |
"SELECT COUNT(*) FROM resource_elements WHERE resources_idresources=? AND active=1 " |
public static final java.lang.String |
selectResourceFilterByType |
"SELECT idresources,name,note FROM resources AS q JOIN resources_type ON (q.resources_type_idresources_type=resources_type.idresources_type) WHERE resources_type.type=? AND q.active=1 ORDER BY idresources DESC " |
public static final java.lang.String |
selectResourceInformtaionByID |
"SELECT idresources,name,note FROM resources WHERE idresources=? AND active=1 " |
public static final java.lang.String |
selectResourceTypes |
"SELECT idresources_type FROM resources_type WHERE type=? " |
public static final java.lang.String |
selectSourcesIDByName |
"SELECT idsources FROM sources WHERE source_name=?" |
public static final java.lang.String |
totalResourceClassSyn |
"SELECT COUNT(*) FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND classes_idclasses=? AND t.active=1 AND s.active=1" |
public static final java.lang.String |
totalResourceClassTerms |
"SELECT COUNT(*) FROM resource_elements WHERE resources_idresources=? AND classes_idclasses=? AND active=1 " |
public static final java.lang.String |
totalResourceSyn |
"SELECT COUNT(*) FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND t.active=1 AND s.active=1 " |
public static final java.lang.String |
totalResourceTerms |
"SELECT COUNT(*) FROM resource_elements WHERE resources_idresources=? AND active=1 " |
public static final java.lang.String |
updateClass |
"UPDATE classes SET class=? WHERE idclasses=? " |
public static final java.lang.String |
updateElement |
"UPDATE resource_elements SET element=? , classes_idclasses=? WHERE idresource_elements=? AND active=1" |
public static final java.lang.String |
updateResourceElement |
"UPDATE resource_elements SET element=?WHERE idresource_elements=? AND resources_idresources=? AND classes_idclasses=? AND active=1 " |
public static final java.lang.String |
updateResourceElement2 |
"UPDATE resource_elements SET element=? , classes_idclasses=? WHERE idresource_elements=? AND resources_idresources=? AND active=1 " |
public static final java.lang.String |
updateSynonym |
"UPDATE synonyms SET synonym=? WHERE resource_elements_idresource_elements=? AND synonym=? AND active=1 " |
| pt.uminho.anote2.datastructures.database.queries.resources.dics.QueriesDics | ||
|---|---|---|
public static final java.lang.String |
getTerms |
"SELECT idresource_elements,element,classes_idclasses FROM resource_elements WHERE resources_idresources=? AND active=1 " |
public static final java.lang.String |
selectExternalIDandSource |
"SELECT external_id,s.idsources,s.source_name FROM resource_elements_extenal_id t JOIN sources s ON t.sources_idsources = s.idsources WHERE resource_elements_idresource_elements=? AND active=1 " |
public static final java.lang.String |
selectSynTermsClass |
"SELECT idresource_elements,s.synonym FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=? AND classes_idclasses=? AND t.active=1 AND s.active=1" |
public static final java.lang.String |
selectTermsClass |
"SELECT idresource_elements,element FROM resource_elements WHERE resources_idresources=? AND classes_idclasses=? AND active=1" |
public static final java.lang.String |
termSyn |
"SELECT idresource_elements,s.synonym,t.classes_idclasses FROM resource_elements t JOIN synonyms s ON t.idresource_elements = s.resource_elements_idresource_elements WHERE resources_idresources=?\tAND s.active=1 AND t.active=1 " |
| pt.uminho.anote2.datastructures.database.queries.resources.rules.QueriesRules | ||
|---|---|---|
public static final java.lang.String |
changePriorety |
"UPDATE resources_elements_prioreties SET priorety=? WHERE resource_elements_idresource_elements=? " |
public static final java.lang.String |
findMAxPriorety |
"SELECT MAX(priorety) FROM resources_elements_prioreties WHERE resource_elements_resources_idresources=?" |
public static final java.lang.String |
getAllElementsWhitPriorety |
"SELECT * FROM resource_elements JOIN resources_elements_prioreties ON resources_elements_prioreties.resource_elements_idresource_elements=resource_elements.idresource_elements WHERE resources_idresources=? AND active=1 ORDER BY priorety " |
public static final java.lang.String |
insertPrioretyOnRule |
"INSERT INTO resources_elements_prioreties (resource_elements_idresource_elements,resource_elements_resources_idresources,priorety) VALUES(?,?,?)" |
public static final java.lang.String |
reorderPriorety |
"UPDATE resources_elements_prioreties SET priorety=priorety-1 WHERE resource_elements_resources_idresources=? AND priorety >=? " |
| pt.uminho.anote2.datastructures.database.schema.DatabaseTablesName | ||
|---|---|---|
public static final java.lang.String |
resources |
"resources" |
| pt.uminho.anote2.datastructures.nlptools.OpenNLP | ||
|---|---|---|
public static final java.lang.String |
postaggingModelFile |
"nlpmodels/en-pos-maxent.bin" |
public static final java.lang.String |
postaggingModelPerceptionFile |
"nlpmodels/en-pos-perceptron.bin" |
public static final java.lang.String |
sentenceModelFile |
"nlpmodels/en-sent.bin" |
public static final java.lang.String |
tokeniserModelFile |
"nlpmodels/en-token.bin" |
| pt.uminho.anote2.datastructures.resources.Dictionary.Loaders.csv.ColumnNames | ||
|---|---|---|
public static final java.lang.String |
classe |
"Class" |
public static final java.lang.String |
externalID |
"ExternalID" |
public static final java.lang.String |
synonyms |
"Synonyms" |
public static final java.lang.String |
term |
"Term" |
| pt.uminho.anote2.datastructures.textprocessing.ParsingUtils | ||
|---|---|---|
public static final java.lang.String |
BEGINING_ENTER |
"^(\\s*(<br/>)\\s*)+" |
public static final java.lang.String |
BEGINING_PARAGRAPH |
"((\\s)*<PARAGRAPH>(\\s)*)+" |
public static final java.lang.String |
DOUBLE_ENTER |
"(\\s)*<br/>(\\s)*<br/>(\\s)*" |
public static final java.lang.String |
END_ENTER |
"(\\s*(<br/>)\\s*)+$" |
public static final java.lang.String |
END_PARAGRAPH |
"((\\s)*</PARAGRAPH>(\\s)*)+" |
public static final java.lang.String |
ENTER_MANDATORY |
"(\\s*(<br/>)\\s*)+" |
public static final java.lang.String |
ENTER_OPTIONAL |
"(\\s*(<br/>)\\s*)*" |
public static final java.lang.String |
FONT_END |
"</b></FONT>" |
public static final java.lang.String |
FONT_START |
"<FONT COLOR=[^>]+><b>" |
| pt.uminho.anote2.datastructures.textprocessing.TermSeparator | ||
|---|---|---|
public static final java.lang.String |
SEPARATOR |
"[ ]{0,1}([\',;:\\+\\*\\-\\/\\(\\)\\]\\[{}])[ ]{0,1}" |
| pt.uminho.anote2.datastructures.textprocessing.documentStructure.PieceToSearch | ||
|---|---|---|
public static final int |
MAXWORDSIZE |
50 |
| pt.uminho.anote2.datastructures.utils.Utils | ||
|---|---|---|
public static final java.lang.String |
DATE_FORMAT |
"yyyy-MM-dd HH:mm:ss" |
| pt.uminho.anote2.datastructures.utils.conf.GlobalGUIOptions | ||
|---|---|---|
public static final int |
popupMassagesTime |
2000 |
public static final int |
tableSelectionSize |
25 |
| pt.uminho.anote2.datastructures.utils.conf.GlobalNames | ||
|---|---|---|
public static final java.lang.String |
abstractOrFullText |
"Abstract or Full Text" |
public static final java.lang.String |
abstracts |
"Abstract" |
public static final java.lang.String |
allclasses |
"All Classes" |
public static final java.lang.String |
casesensitive |
"Case Sensitive" |
public static final java.lang.String |
compounds |
"Compound" |
public static final java.lang.String |
entityBasedProcess |
"Entity Based Process" |
public static final java.lang.String |
entrezGeneHyphoteticalProtein |
"Hypothetical protein" |
public static final java.lang.String |
enzymes |
"Enzyme" |
public static final java.lang.String |
fullText |
"Full Text" |
public static final java.lang.String |
gene |
"Gene" |
public static final java.lang.String |
manualcuration |
"Manual Curation" |
public static final java.lang.String |
menuLinkOut |
"Link Out" |
public static final java.lang.String |
mergeDictionariesReportTitle |
"Dictionary Merge Report" |
public static final java.lang.String |
mergeLexicalWordsReportTitle |
"Lexical Words Merge Report" |
public static final java.lang.String |
mergeLookupTablesReportTitle |
"Lookup Table Merge Report" |
public static final java.lang.String |
mergeNER |
"Merged Schemas" |
public static final java.lang.String |
mergeNERSchema |
"mergeNERSchema" |
public static final java.lang.String |
mergeRulesReportTitle |
"Rules Merge Report" |
public static final java.lang.String |
metabolicGenes |
"Metabolic Genes" |
public static final java.lang.String |
ner |
"NER" |
public static final java.lang.String |
nerAbner |
"Abner Tagger" |
public static final java.lang.String |
nerAbnerModel |
"model" |
public static final java.lang.String |
nerAnote |
"@Note2 NER Lexical Resources" |
public static final java.lang.String |
nerChemistryTagger |
"Chemistry Tagger" |
public static final java.lang.String |
nerChemistryTaggerChemistryCompounds |
"ChemicalCompound" |
public static final java.lang.String |
nerChemistryTaggerChemistryElements |
"ChemicalElement" |
public static final java.lang.String |
nerChemistryTaggerChemistrylon |
"ChemicalIon" |
public static final java.lang.String |
nerpreProcessing |
"NER Preprocessing :" |
public static final java.lang.String |
nerpreProcessingNo |
"No" |
public static final java.lang.String |
nerpreProcessingPosTagging |
"POS Tagging" |
public static final java.lang.String |
nerpreProcessingPosTaggingAndStopWords |
"POS Tagging + Stop Words" |
public static final java.lang.String |
nerpreProcessingTags |
"NER Preprocessing (POS Tags) :" |
public static final java.lang.String |
NERSchema |
"merged Schema" |
public static final java.lang.String |
normalization |
"Normalization" |
public static final java.lang.String |
organimsOption |
"organism" |
public static final java.lang.String |
organism |
"Organism" |
public static final java.lang.String |
pathways |
"Pathways" |
public static final java.lang.String |
protein |
"Protein" |
public static final java.lang.String |
re |
"RE" |
public static final java.lang.String |
reactions |
"Reactions" |
public static final java.lang.String |
recooccurrenceModel |
"Rel@tion Cooccurrence Model" |
public static final java.lang.String |
relation |
"Rel@tion RE" |
public static final java.lang.String |
relationCooccurrence |
"Rel@tion RE Cooccurrence" |
public static final java.lang.String |
relationModel |
"Relation model" |
public static final java.lang.String |
relationPropertyDirectionally |
"directionally" |
public static final java.lang.String |
relationPropertyDirectionallyConditional |
"Conditional (?)" |
public static final java.lang.String |
relationPropertyDirectionallyNegative |
"Negative (-)" |
public static final java.lang.String |
relationPropertyDirectionallyPositive |
"Positive (+)" |
public static final java.lang.String |
relationPropertyDirectionallyUnknown |
"Unknown (?)" |
public static final java.lang.String |
relationPropertyLemma |
"lemma" |
public static final java.lang.String |
relationPropertyPolarity |
"polarity" |
public static final java.lang.String |
sourceQueries |
"Source Queries" |
public static final java.lang.String |
stopWords |
"Stop Words" |
public static final java.lang.String |
stopWordsResourceID |
"Stop Words Resource ID" |
public static final java.lang.String |
taggerName |
"Tagger" |
public static final java.lang.String |
textType |
"Text Type" |
public static final java.lang.String |
updateDictionariesReportTitle |
"Dictionary Update Report" |
public static final java.lang.String |
updateLexicalWordsReportTitle |
"Lexical Words Update Report" |
public static final java.lang.String |
updateLookupTableReportTitle |
"Lookup Table Update Report" |
public static final java.lang.String |
useOtherResourceInformationInRules |
"Use Other Resource Information In Rules" |
public static final java.lang.String |
verbAddition |
"Verb Addition Resource (ID)" |
public static final java.lang.String |
verbAdditionOnly |
"Verb List Resource (ID)" |
public static final java.lang.String |
verbFilter |
"Verb Filter Resource (ID) " |
| pt.uminho.anote2.datastructures.utils.conf.GlobalOptions | ||
|---|---|---|
public static final java.lang.String |
anote2Version |
"0.9.7" |
public static final java.lang.String |
checkForUpdatesURL |
"http://sourceforge.net/projects/anote2/files/" |
public static final java.lang.String |
configurationFile |
"conf/settings.conf" |
public static final java.lang.String |
corporaAnnotatedDocument |
"annotateddoc" |
public static final java.lang.String |
corporacorpusName |
"corpus" |
public static final java.lang.String |
corporaName |
"corpora" |
public static final java.lang.String |
corporaProcessName |
"process" |
public static final int |
generalHeight |
600 |
public static final int |
generalWidth |
800 |
public static final java.lang.String |
mysqlDatabase |
"anote_db" |
public static final java.lang.String |
mysqlDatabaseFile |
"./conf/database/mysql_anote2_db.sql" |
public static final java.lang.String |
mysqlDatabaseVersionFile |
"./conf/database/anote2_db_version.xml" |
public static final java.lang.String |
mysqlDatbaseUpdateEndNameFile |
".sql" |
public static final java.lang.String |
mysqlDatbaseUpdateEndNameInfoFile |
".info" |
public static final java.lang.String |
mysqlDatbaseUpdateFolder |
"./conf/database" |
public static final java.lang.String |
mysqlDatbaseUpdateStartNameFile |
"anote2_db_update_" |
public static final java.lang.String |
otherConfigurationFile |
"conf/othersettings.xml" |
public static final java.lang.String |
pluginManagerFile |
"conf/pluginmanager.conf" |
public static final java.lang.String |
publicationManagerName |
"publicationmanager" |
public static final java.lang.String |
publicationManagerQuery |
"query" |
public static final java.lang.String |
pubmedLink |
"http://www.ncbi.nlm.nih.gov/pubmed/" |
public static final java.lang.String |
resourcesDictionariesName |
"dictionaries" |
public static final java.lang.String |
resourcesDictionaryName |
"dictionary" |
public static final java.lang.String |
resourcesLexicalWords |
"lexicalwords" |
public static final java.lang.String |
resourcesLexicalWordsSet |
"lexicalwordsset" |
public static final java.lang.String |
resourcesLookupTableName |
"lookuptable" |
public static final java.lang.String |
resourcesLookupTablesName |
"lookuptables" |
public static final java.lang.String |
resourcesName |
"resources" |
public static final java.lang.String |
resourcesOntologiesName |
"ontologies" |
public static final java.lang.String |
resourcesOntologyName |
"ontology" |
public static final java.lang.String |
resourcesRuleSetName |
"rule" |
public static final java.lang.String |
resourcesRulesResourceName |
"rules" |
public static final java.lang.String |
rootName |
"Anote2" |
public static final java.lang.String |
saveDocDirectoty |
"Docs/" |
public static final int |
smallHeight |
400 |
public static final int |
smallWidth |
600 |
public static final int |
superHeight |
680 |
public static final int |
superWidth |
1024 |
public static final java.lang.String |
wikiGeneralLink |
"http://darwin.di.uminho.pt/anote2/wiki/index.php/" |
| pt.uminho.anote2.datastructures.utils.conf.GlobalSources | ||
|---|---|---|
public static final java.lang.String |
biocyc |
"BioCyc" |
public static final java.lang.String |
biowarehouse |
"BiowareHouse" |
public static final java.lang.String |
brenda |
"Brenda" |
public static final java.lang.String |
cas |
"Chemical Abstracts Service" |
public static final java.lang.String |
chebi |
"Chebi" |
public static final java.lang.String |
entrezgene |
"Entrez Gene" |
public static final java.lang.String |
geneOntollogyShortName |
"GO" |
public static final java.lang.String |
geneOntology |
"Gene Ontology" |
public static final java.lang.String |
kegg |
"Kegg" |
public static final java.lang.String |
ncbitaxonomy |
"Ncbi Taxonomy" |
public static final java.lang.String |
uniprot |
"UniProt" |
| pt.uminho.anote2.datastructures.utils.conf.GlobalTablesName | ||
|---|---|---|
public static final java.lang.String |
annotations |
"annotations" |
public static final java.lang.String |
classes |
"classes" |
public static final java.lang.String |
cluster |
"clusters_process" |
public static final java.lang.String |
clusterLabels |
"clusters_labels" |
public static final java.lang.String |
corpus |
"corpus" |
public static final java.lang.String |
database |
"anote2_db" |
public static final java.lang.String |
menulinks |
"hypher_links_menu" |
public static final java.lang.String |
processes |
"processes" |
public static final java.lang.String |
processType |
"processes_type" |
public static final java.lang.String |
publications |
"publications" |
public static final java.lang.String |
publicationsIdYype |
"publications_id_type" |
public static final java.lang.String |
query |
"queries" |
public static final java.lang.String |
relationtype |
"relation_type" |
public static final java.lang.String |
resource_elements |
"resource_elements" |
public static final java.lang.String |
resources |
"resources" |
public static final java.lang.String |
resourcesType |
"resources_type" |
public static final java.lang.String |
resourceTotalSynonyms |
"resources_total_elements_synonyms" |
public static final java.lang.String |
resourceTotalTerms |
"resources_total_elements" |
public static final java.lang.String |
resourceTotalTermsClass |
"resources_class_stats" |
public static final java.lang.String |
resourceTotalTermsSynonymsClass |
"resources_class_synonyms_count" |
public static final java.lang.String |
sources |
"sources" |
| pt.uminho.anote2.datastructures.utils.conf.GlobalTextInfo | ||
|---|---|---|
public static final java.lang.String |
abnerInfo |
"ABNER is A Biomedical Named Entity Recogniser. It uses machine learning (linear-chain conditional random fields, CRFs) to find entities such as genes, cell types, and DNA in text. Full details of ABNER can be found at http://pages.cs.wisc.edu/ bsettles/abner/" |
public static final java.lang.String |
chemistryTaggerInfo |
"Chemistry Tagger is designed to tag a number of chemistry items in running text. Currently the tagger tags compound formulas (e.g. SO2, H2O, H2SO4 ...) ions (e.g. Fe3+, Cl-) and element names and symbols (e.g. Sodium and Na). For more details visit http://gate.ac.uk/sale/tao/splitch21.html#sec:parsers:chemistrytagger" |
public static final java.lang.String |
configurationWizardStepFour |
"You can change @Note2 settings by selecting the option \u00e2\u0080\u009cSettings\u00e2\u0080\u009d in the menu bar as shown below. Press \u00e2\u0080\u009cOk\u00e2\u0080\u009d to finish the configuration." |
public static final java.lang.String |
configurationWizardStepOne |
"This is probably the first time you run @Note2 (\u00e2\u0080\u00a6) (https://sourceforge.net/projects/anote2/). Take a few seconds to configure your system. For help visit darwin.di.uminho.pt/anote2/wiki .Best regards from the @Note2 development team " |
public static final java.lang.String |
configurationWizardStepThree |
"You need to configure the MySql database credentials by filling user and password fields. " |
public static final java.lang.String |
configurationWizardStepTwo |
" You must configure a proxy for internet access. If you don\u00e2\u0080\u0099t need to use a proxy, simply click \u00e2\u0080\u009cNext\u00e2\u0080\u009d; otherwise, check the \u00e2\u0080\u009cUse proxy\u00e2\u0080\u009d option and provide proxy credentials." |
public static final java.lang.String |
createCorpus |
"Setup wizard to create a new corpus. You can select queries and filter results using different criteria." |
public static final java.lang.String |
databasedeleteCorpusInfo |
"If you click \u00e2\u0080\u009cOk\u00e2\u0080\u009d, this operation will delete the selected Corpus and all processes associated with it. To cancel the operation, press \u00e2\u0080\u009cCancel\u00e2\u0080\u009d." |
public static final java.lang.String |
databasedeleteProcessInfo |
"If you click \u00e2\u0080\u009cOk\u00e2\u0080\u009d, this operation will delete the selected process from the Corpus and all its information. To cancel the operation, press \u00e2\u0080\u009cCancel\u00e2\u0080\u009d." |
public static final java.lang.String |
databasedeleteQueryInfo |
"If you click \u00e2\u0080\u009cOk\u00e2\u0080\u009d, this operation will delete the selected Query and all its information. To cancel the operation, press \u00e2\u0080\u009cCancel\u00e2\u0080\u009d." |
public static final java.lang.String |
databasedeleteResourceInfo |
"If you click \u00e2\u0080\u009cOk\u00e2\u0080\u009d, this operation will delete the selected Lexical Resource and all its information. To cancel the operation, press \u00e2\u0080\u009cCancel\u00e2\u0080\u009d." |
public static final java.lang.String |
nerSelectAlreadyDoneNer |
"Load configuration from an existent NER process using the same lexical resources and options (stop words and disambiguation)." |
public static final java.lang.String |
nerSelectNewNER |
"Perform a new NER process based on lexical resources (Dictionaries, Lookup Tables, Rule Sets, Ontologies) matching terms in the text. Also, you can filter results using Stop Words (Lexical Words Resource) to remove common English words and improve results using the disambiguation process." |
public static final java.lang.String |
pleasewait |
"Processing... please wait." |
| pt.uminho.anote2.relation.settings.RERelationDefaultSettings | ||
|---|---|---|
public static final java.lang.String |
BIOMEDICAL_VERB_MODEL |
"RE.Relation.BiomedicalVerbModelLexicalWordID" |
public static final java.lang.String |
MODEL |
"RE.Relation.Model" |
public static final java.lang.String |
POSTAGGER |
"RE.Relation.POSTagger" |
public static final java.lang.String |
VERB_ADDITION |
"RE.Relation.VerbAddition" |
public static final java.lang.String |
VERB_ADDITION_LEXICAL_WORDS_ID |
"RE.Relation.VerbAdditionLexicalWordID" |
public static final java.lang.String |
VERB_FILTER |
"RE.Relation.VerbFilter" |
public static final java.lang.String |
VERB_FILTER_LEXICAL_WORDS_ID |
"RE.Relation.VerbFilterLexicalWordID" |
| pt.uminho.anote2.workflow.settings.basic.WorkflowBasicsDefaulSettings | ||
|---|---|---|
public static final java.lang.String |
BIOMEDICAL_VERB_MODEL |
"Workflow.Basic.RERelationBiomedicalVerbModelLexicalWordID" |
public static final java.lang.String |
CASE_SENSITIVE |
"Workflow.Basic.NERLexicalResourcesCaseSensitive" |
public static final java.lang.String |
CORPUS_NAME |
"Workflow.Basic.CorpusName" |
public static final java.lang.String |
CORPUS_RETRIEVAL_PDF |
"Workflow.Basic.CorpusRetrievalPDF" |
public static final java.lang.String |
CORPUS_TYPE |
"Workflow.Basic.CorpusType" |
public static final java.lang.String |
LEXICAL_RESOURCE_STOPWORDS_ID |
"Workflow.Basic.NERLexicalResourcesStopWords" |
public static final java.lang.String |
MODEL |
"Workflow.Basic.RERelationModel" |
public static final java.lang.String |
NER |
"Workflow.Basic.NER" |
public static final java.lang.String |
NORMALIZATION |
"Workflow.Basic.NERLexicalResourcesNormalization" |
public static final java.lang.String |
POSTAGGER |
"Workflow.Basic.RERelationPOSTagger" |
public static final java.lang.String |
PRE_PROCESSING |
"Workflow.Basic.NERLexicalResourcesPreProcessing" |
public static final java.lang.String |
RE |
"Workflow.Basic.RE" |
public static final java.lang.String |
USE_PARTIAL_MATCH_WITH_DICTIONARIES |
"Workflow.Basic.NERLexicalResourcesPartialMatchWithDictionaries" |
public static final java.lang.String |
VERB_ADDITION |
"Workflow.Basic.RERelationVerbAddition" |
public static final java.lang.String |
VERB_ADDITION_LEXICAL_WORDS_ID |
"Workflow.Basic.RERelationVerbAdditionLexicalWordID" |
public static final java.lang.String |
VERB_FILTER |
"Workflow.Basic.RERelationVerbFilter" |
public static final java.lang.String |
VERB_FILTER_LEXICAL_WORDS_ID |
"Workflow.Basic.RERelationVerbFilterLexicalWordID" |
| pt.uminho.anote2.workflow.settings.general.WorkflowGeneralDefaulSettings | ||
|---|---|---|
public static final java.lang.String |
BIOMEDICAL_VERB_MODEL |
"Workflow.General.RERelationBiomedicalVerbModelLexicalWordID" |
public static final java.lang.String |
CASE_SENSITIVE |
"Workflow.General.NERLexicalResourcesCaseSensitive" |
public static final java.lang.String |
CORPUS_NAME |
"Workflow.General.CorpusName" |
public static final java.lang.String |
CORPUS_RETRIEVAL_PDF |
"Workflow.General.CorpusRetrievalPDF" |
public static final java.lang.String |
CORPUS_TYPE |
"Workflow.General.CorpusType" |
public static final java.lang.String |
LEXICAL_RESOURCE_STOPWORDS_ID |
"Workflow.General.NERLexicalResourcesStopWords" |
public static final java.lang.String |
MODEL |
"Workflow.General.RERelationModel" |
public static final java.lang.String |
NER |
"Workflow.General.NER" |
public static final java.lang.String |
NORMALIZATION |
"Workflow.General.NERLexicalResourcesNormalization" |
public static final java.lang.String |
POSTAGGER |
"Workflow.General.RERelationPOSTagger" |
public static final java.lang.String |
PRE_PROCESSING |
"Workflow.General.NERLexicalResourcesPreProcessing" |
public static final java.lang.String |
RE |
"Workflow.General.RE" |
public static final java.lang.String |
USE_PARTIAL_MATCH_WITH_DICTIONARIES |
"Workflow.General.NERLexicalResourcesPartialMatchWithDictionaries" |
public static final java.lang.String |
VERB_ADDITION |
"Workflow.General.RERelationVerbAddition" |
public static final java.lang.String |
VERB_ADDITION_LEXICAL_WORDS_ID |
"Workflow.General.RERelationVerbAdditionLexicalWordID" |
public static final java.lang.String |
VERB_FILTER |
"Workflow.General.RERelationVerbFilter" |
public static final java.lang.String |
VERB_FILTER_LEXICAL_WORDS_ID |
"Workflow.General.RERelationVerbFilterLexicalWordID" |
| pt.uminho.anote2.workflow.settings.query.WorkflowQueryDefaulSettings | ||
|---|---|---|
public static final java.lang.String |
BIOMEDICAL_VERB_MODEL |
"Workflow.Query.RERelationBiomedicalVerbModelLexicalWordID" |
public static final java.lang.String |
CASE_SENSITIVE |
"Workflow.Query.NERLexicalResourcesCaseSensitive" |
public static final java.lang.String |
CORPUS_NAME |
"Workflow.Query.CorpusName" |
public static final java.lang.String |
CORPUS_RETRIEVAL_PDF |
"Workflow.Query.CorpusRetrievalPDF" |
public static final java.lang.String |
CORPUS_TYPE |
"Workflow.Query.CorpusType" |
public static final java.lang.String |
LEXICAL_RESOURCE_STOPWORDS_ID |
"Workflow.Query.NERLexicalResourcesStopWords" |
public static final java.lang.String |
MODEL |
"Workflow.Query.RERelationModel" |
public static final java.lang.String |
NER |
"Workflow.Query.NER" |
public static final java.lang.String |
NORMALIZATION |
"Workflow.Query.NERLexicalResourcesNormalization" |
public static final java.lang.String |
POSTAGGER |
"Workflow.Query.RERelationPOSTagger" |
public static final java.lang.String |
PRE_PROCESSING |
"Workflow.Query.NERLexicalResourcesPreProcessing" |
public static final java.lang.String |
RE |
"Workflow.Query.RE" |
public static final java.lang.String |
USE_PARTIAL_MATCH_WITH_DICTIONARIES |
"Workflow.Query.NERLexicalResourcesPartialMatchWithDictionaries" |
public static final java.lang.String |
VERB_ADDITION |
"Workflow.Query.RERelationVerbAddition" |
public static final java.lang.String |
VERB_ADDITION_LEXICAL_WORDS_ID |
"Workflow.Query.RERelationVerbAdditionLexicalWordID" |
public static final java.lang.String |
VERB_FILTER |
"Workflow.Query.RERelationVerbFilter" |
public static final java.lang.String |
VERB_FILTER_LEXICAL_WORDS_ID |
"Workflow.Query.RERelationVerbFilterLexicalWordID" |
| pt.uminho.anote2.workflow.text.WorkflowBasicsTextFont | ||
|---|---|---|
public static final java.lang.String |
WorkflowBasicStep1 |
"Specify PubMed query to retrieve documents for text mining..." |
public static final java.lang.String |
WorkflowBasicStep2 |
"Select one or more dictionaries to use for text mining..." |
public static final java.lang.String |
WorkflowBasicStep3 |
"Select term classes to use for text mining..." |
| pt.uminho.generic.genericpanel.filechooser.FileChooserAibench | ||
|---|---|---|
public static final java.lang.String |
CHOOSE_FILE_ACTION_COMMAND |
"chooseFile" |
| pt.uminho.generic.genericpanel.tablesearcher.FilterRowPanel | ||
|---|---|---|
public static final java.lang.String |
REMOVE_ZERO_ROWS_CHECKBOX_ACTION_COMMAND |
"removeZeroRowsActionCommand" |
| pt.uminho.generic.genericpanel.tablesearcher.SelectColumnPanel | ||
|---|---|---|
public static final java.lang.String |
CHANGE_BUTTON_COMAND |
"changeBottonComand" |
| pt.uminho.generic.genericpanel.tablesearcher.TableSearchPanel<I> | ||
|---|---|---|
public static final java.lang.String |
SAVE_OPTION_BUTTON_ACTION_COMMAND |
"savecomandoption" |
public static final java.lang.String |
SEARCH_OPTION_BUTTON_ACTION_COMMAND |
"searchOptionButtonActionCommand" |
| pt.uminho.generic.genericpanel.tablesearcher.searchPanel.SearchBasicOptionsPanel | ||
|---|---|---|
public static final java.lang.String |
Case_Sensitive_Pressed |
"Case_Sensitive_Pressed" |
public static final java.lang.String |
Match_Whole_Word_Pressed |
"Match_Whole_Word_Pressed" |
| pt.uminho.generic.wizard2.DefinitionsWizard | ||
|---|---|---|
public static final java.lang.String |
BACK_BUTTON_ACTION_COMMAND |
"backPressed" |
public static final java.lang.String |
BACK_BUTTON_TEXT |
"Back" |
public static final java.lang.String |
CANCEL_BUTTON_ACTION_COMMAND |
"cancelPressed" |
public static final java.lang.String |
CANCEL_BUTTON_TEXT |
"Cancel" |
public static final java.lang.String |
FINISH_BUTTON_ACTION_COMMAND |
"finishPressed" |
public static final java.lang.String |
FINISH_BUTTON_TEXT |
"Finish" |
public static final java.lang.String |
NEXT_BUTTON_ACTION_COMMAND |
"nextPressed" |
public static final java.lang.String |
NEXT_BUTTON_TEXT |
"Next" |
|
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